CLCN2

General Information

Gene Name : CLCN2
Gene ID : ENSG00000114859.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CLCN2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CLCN2	ENSG00000114859.15	0.56	0.74	0.65	ENCSR000AEF
HepG2	CLCN2	ENSG00000114859.15	14.11	8.35	11.23	ENCSR985KAT
K562	CLCN2	ENSG00000114859.15	7.36	6.30	6.83	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CLCN2 is not avaliable on ENCORE database.

Proteins bound to RNA

CLCN2 RNA is bound by 5 proteins.

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eCLIP assay for CLCN2 is not avaliable on ENCORE database.

5 proteins are bound to CLCN2 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	184070060	184070131	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	5.58738	11.12141	HepG2	PRPF8
chr3	184070482	184070535	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.78265	10.32997	HepG2	PRPF8
chr3	184079225	184079339	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.98804	9.09300	HepG2	DDX3X
chr3	184076715	184076770	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.15925	8.72621	HepG2	PRPF8
chr3	184071042	184071086	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	5.10089	7.35950	HepG2	PPIG
chr3	184070464	184070528	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	5.25389	7.28294	K562	AQR
chr3	184079218	184079261	-	5'-UTR,CDS,intron-Distal	4.84994	6.91190	HepG2	PPIG
chr3	184071363	184071459	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.20935	6.82513	HepG2	PRPF8
chr3	184072336	184072355	-	CDS,intron-Distal	4.47470	5.18660	HepG2	PPIG
chr3	184064047	184064103	-	3'-UTR,intron-Distal,intron-Proximal	5.65535	5.06516	K562	PUM2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 13 entries

eCLIP assay for CLCN2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CLCN2 is not available on ENCORE database.
67 RBPs can affect the levels of CLCN2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CLCN2 is not available on ENCORE database.

67 RBPs can affect the gene expression of CLCN2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CLCN2	ENSG00000114859.10	645.27990	263.38110	1.29270	16.55480	14.99610	HepG2	HNRNPK
CLCN2	ENSG00000114859.10	630.64050	288.31560	1.12910	15.64340	14.37990	HepG2	PUF60
CLCN2	ENSG00000114859.10	258.13670	482.31320	-0.90180	11.05520	10.23440	HepG2	SRFBP1
CLCN2	ENSG00000114859.10	505.59090	284.69030	0.82850	10.45600	9.34350	HepG2	SRSF5
CLCN2	ENSG00000114859.10	423.54730	217.93920	0.95850	8.42810	7.45250	HepG2	BOP1
CLCN2	ENSG00000114859.10	199.17990	359.07610	-0.85020	7.74480	6.63080	K562	EIF2S2
CLCN2	ENSG00000114859.10	351.90490	201.66990	0.80310	7.43250	6.58470	HepG2	TRIM56
CLCN2	ENSG00000114859.10	178.33740	322.59710	-0.85510	6.67650	5.87120	HepG2	TAF15
CLCN2	ENSG00000114859.10	504.53660	288.55670	0.80600	5.95120	5.03900	HepG2	NCBP2
CLCN2	ENSG00000114859.10	221.17930	358.88630	-0.69830	5.31360	4.71250	HepG2	SRSF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 80 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CLCN2 is not available on ENCORE database.

5 RBPs can affect the splicing of CLCN2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	CLCN2	ENSG00000114859.10	chr3	-	184073481	184073724			184073481	184073566	184074780	184074882	0.26400	0.00018	0.01174	longer	K562	PUS1
A3SS	CLCN2	ENSG00000114859.10	chr3	-	184073481	184073724			184073481	184073566	184074780	184074882	0.29800	0.00079	0.03272	longer	HepG2	U2AF1
A3SS	CLCN2	ENSG00000114859.10	chr3	-	184072335	184072502			184072335	184072446	184072691	184072761	0.41600	0.00124	0.08323	longer	HepG2	SF3A3
A3SS	CLCN2	ENSG00000114859.10	chr3	-	184072335	184072502			184072335	184072446	184072691	184072761	0.74200	0.00128	0.06215	longer	K562	SF3B4
MXE	CLCN2	ENSG00000114859.10	chr3	-	184069800	184069905	184070080	184070119	184064722	184064809	184070230	184070284	-0.24600	0.00144	0.04742	2included	HepG2	SF3A3
A3SS	CLCN2	ENSG00000114859.10	chr3	-	184073481	184073724			184073481	184073566	184074780	184074808	0.20900	0.00211	0.01352	longer	K562	AQR
A3SS	CLCN2	ENSG00000114859.10	chr3	-	184064722	184064858			184064722	184064809	184069800	184069905	0.11600	0.00287	0.01776	longer	K562	AQR
MXE	CLCN2	ENSG00000114859.10	chr3	-	184069800	184069905	184070080	184070119	184064722	184064809	184070230	184070284	0.14800	0.00564	0.07875	1included	HepG2	U2AF1
A3SS	CLCN2	ENSG00000114859.10	chr3	-	184072335	184072502			184072335	184072446	184072691	184072761	0.48100	0.00576	0.03271	longer	K562	AQR
A3SS	CLCN2	ENSG00000114859.10	chr3	-	184070230	184070396			184070230	184070284	184070524	184070598	0.12800	0.01908	0.09159	longer	K562	AQR

Showing 1 to 10 of 10 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CLCN2

General Information

Functions

Localization

Domains (AlphaFold: CLCN2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CLCN2 is not avaliable on ENCORE database.

5 proteins are bound to CLCN2 RNA:

eCLIP assay for CLCN2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CLCN2 is not available on ENCORE database.

67 RBPs can affect the gene expression of CLCN2 :

The Knockdown/knockout RNA-Seq assay for CLCN2 is not available on ENCORE database.

5 RBPs can affect the splicing of CLCN2 :

The Knockdown/knockout RNA-Seq assay for CLCN2 is not avaliable on ENCORE database.