CCDC9

General Information

Gene Name       : CCDC9
Gene ID             : ENSG00000105321.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CCDC9)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CCDC9ENSG00000105321.131.085.233.16ENCSR000AEF
HepG2CCDC9ENSG00000105321.1313.967.8410.90ENCSR985KAT
K562CCDC9ENSG00000105321.1315.6313.1414.39ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CCDC9 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CCDC9 RNA is bound by 37 proteins.  







eCLIP assay for CCDC9 is not avaliable on ENCORE database.





37 proteins are bound to CCDC9 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr194777492747774944+3'-UTR,CDS4.4709821.29180K562EIF4G2
chr194777504147775084+3'-UTR4.9740116.27966K562EIF4G2
chr194777498047775041+3'-UTR5.9185264.24427K562EIF4G2
chr194777500647775112+3'-UTR6.0425955.35363K562PABPC4
chr194777515347775173+3'-UTR4.410038.03551K562EIF4G2
chr194777496347775046+3'-UTR3.128703.15050HepG2TIAL1
chr194777495047775037+3'-UTR4.160473.08171K562APOBEC3C
chr194777494047775081+3'-UTR3.762936.25289K562IGF2BP1
chr194777497247775083+3'-UTR4.115906.20881HepG2SUB1
chr194777493047775101+3'-UTR,CDS6.274057.30436HepG2DKC1
chr194777503247775078+3'-UTR3.860683.01321K562LSM11
chr194777495947775079+3'-UTR3.2969911.96541K562ZC3H11A
chr194777494447774980+3'-UTR5.0045540.90018K562EIF4G2
chr194777496147775097+3'-UTR5.9641621.11411K562DDX6
chr194777496747775040+3'-UTR3.177223.01032HepG2LARP4
chr194777502847775080+3'-UTR3.036504.07771K562ZNF622
chr194777496747775040+3'-UTR3.796744.84840HepG2DDX55
chr194777493747775027+3'-UTR4.407714.38053K562SRSF7
chr194777496047775078+3'-UTR3.372775.90455K562DDX55
chr194777496047775098+3'-UTR5.3909023.07350K562TARDBP
chr194776158247761638+5'-UTR,intron-Proximal4.942344.86944K562AQR
chr194776085547760933+5'-UTR,intron-Distal,intron-Proximal3.988443.39593HepG2PRPF4
chr194776161147761657+5'-UTR3.574274.92880K562ZNF622
chr194776359947763680+CDS,intron-Proximal3.329186.92518HepG2PPIG
chr194776803047768057+CDS3.387074.92880K562ZNF622
chr194776187447761902+CDS3.354603.43213K562UCHL5
chr194776991347770032+CDS3.645904.91393K562SRSF1
chr194777473247774849+CDS4.991915.60103K562UPF1
chr194776188547761919+CDS3.398693.59112HepG2PPIG
chr194776351947763583+CDS,intron-Proximal3.422526.04408K562SF3B4
chr194776357947763668+CDS3.643727.19050K562ZNF800
chr194777375647773842+CDS,intron-Proximal3.508076.46304K562SF3B4
chr194776384447763904+CDS,intron-Proximal3.035986.80995K562ZNF622
chr194776819647768251+CDS,intron-Proximal5.549859.63974K562AQR
chr194777460147774708+CDS3.199525.48645K562GRWD1
chr194776357747763671+CDS,intron-Proximal4.729927.48847HepG2GRWD1
chr194776359447763680+CDS,intron-Proximal3.865617.28917K562GRWD1
chr194777003347770086+CDS,intron-Proximal4.940994.35676HepG2PRPF8
chr194776790147767944+CDS,intron-Proximal3.612726.44869K562UCHL5
chr194777461647774729+CDS4.135628.88619K562UCHL5
chr194777375547773820+CDS,intron-Proximal3.808094.83721K562EFTUD2
chr194776817847768201+CDS3.061404.33023K562ZNF622
chr194776349547763581+CDS,intron-Proximal4.603816.12902HepG2SF3B4
chr194777463747774700+CDS3.323938.15127K562ZNF622
chr194776803247768066+CDS4.689885.87202K562UCHL5
chr194777365147773706+CDS,intron-Proximal3.021536.55915K562BUD13
chr194776359747763675+CDS3.007527.12849K562ZNF622
chr194777462247774732+CDS5.295618.40676K562UPF1
chr194776184747761904+CDS3.927553.82000HepG2GRWD1
chr194777465247774724+CDS4.237684.94392K562AKAP1
chr194776785947767944+CDS,intron-Proximal3.672807.99428K562DDX24
chr194776789047767944+CDS,intron-Proximal3.384416.00907HepG2PPIG
chr194776358847763657+CDS3.820248.82687K562UCHL5
chr194777361847773706+CDS,intron-Proximal6.1601514.18173K562SF3B4
chr194776031047760384+intron-Distal5.135449.42220K562CSTF2T
chr194776005447760103+intron-Distal3.030783.31456K562TIA1
chr194776042847760486+intron-Distal4.159043.86024K562EWSR1
chr194776414047764209+intron-Distal,intron-Proximal4.428164.85612K562PRPF8
chr194776014347760200+intron-Distal4.598055.41529HepG2CSTF2T
chr194776004347760098+intron-Distal3.768163.15816HepG2PRPF4
chr194776059147760641+intron-Distal4.661665.24683K562AKAP8L
chr194776434147764483+intron-Distal4.0967410.39610HepG2PCBP2
chr194776441147764545+intron-Distal4.133897.55880K562PTBP1
chr194776424747764332+intron-Distal5.089246.90462K562PTBP1
chr194776004747760114+intron-Distal4.3329515.06331K562CSTF2T
chr194776057847760650+intron-Distal3.841583.15816HepG2PRPF4
chr194776005547760111+intron-Distal3.161663.69435K562AKAP8L
chr194776414947764207+intron-Distal,intron-Proximal3.439614.79829K562EFTUD2
chr194776055547760659+intron-Distal4.6675412.74368K562CSTF2T
chr194776011347760199+intron-Distal4.204555.61307K562GTF2F1
chr194776070947760782+intron-Distal3.864483.15816HepG2PRPF4
chr194776055847760648+intron-Distal4.796196.33281HepG2FAM120A
chr194776442747764524+intron-Distal4.297873.74583HepG2PTBP1
chr194776031047760373+intron-Distal3.859453.48722HepG2PRPF4
chr194776034947760455+intron-Distal5.121459.60672HepG2CSTF2T
chr194776011447760148+intron-Distal3.097265.37119K562CSTF2T
chr194776011947760197+intron-Distal4.458623.89565K562PRPF8
chr194776004647760108+intron-Distal4.314186.56790HepG2FAM120A
chr194776070247760787+intron-Distal3.608917.73925K562CSTF2T
chr194776014847760232+intron-Distal3.758008.61107K562CSTF2T
chr194776004447760098+intron-Distal5.4204010.03041K562GTF2F1
chr194776030147760385+intron-Distal5.357649.13283K562GTF2F1
chr194776029847760364+intron-Distal3.686214.33898HepG2FAM120A
chr194776073747760780+intron-Distal4.406454.06667K562GTF2F1
chr194776010847760205+intron-Distal5.151448.93122HepG2FAM120A
chr194776067147760788+intron-Distal5.6210910.24040K562AKAP8L
chr194776004047760102+intron-Distal4.782415.93727HepG2CSTF2T
chr194775986847759912+intron-Proximal3.373603.96999HepG2CSTF2T
chr194776368747763736+intron-Proximal4.823594.65563K562AQR
chr194776409647764136+intron-Proximal4.442343.62536K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CCDC9 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CCDC9 is not available on ENCORE database.

  • 60 RBPs can affect the levels of CCDC9.  








The Knockdown/knockout RNA-Seq assay for CCDC9 is not available on ENCORE database.





60 RBPs can affect the gene expression of CCDC9 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CCDC9ENSG00000105321.8340.78810269.974400.336001.845701.33100HepG2ACO1
CCDC9ENSG00000105321.8426.39390312.018400.450502.547301.88410HepG2AUH
CCDC9ENSG00000105321.8203.66330269.94680-0.406502.123301.52910HepG2CKAP4
CCDC9ENSG00000105321.8317.81710216.270500.555303.543302.83440HepG2CELF1
CCDC9ENSG00000105321.8429.90650201.223101.095108.592107.56250HepG2DDX6
CCDC9ENSG00000105321.8298.55730193.328600.626903.037302.41700HepG2EIF2S1
CCDC9ENSG00000105321.8316.96630213.596600.569302.589801.97020HepG2EIF4A3
CCDC9ENSG00000105321.8359.48500263.840800.446202.417501.63840HepG2EWSR1
CCDC9ENSG00000105321.8336.43350215.674100.641403.401302.63890HepG2FXR1
CCDC9ENSG00000105321.8347.43340202.702400.777304.822903.92110HepG2HNRNPK
CCDC9ENSG00000105321.8302.11770211.836500.512103.298302.56720HepG2HNRNPL
CCDC9ENSG00000105321.8292.07640203.247700.523002.326601.70210HepG2IGF2BP2
CCDC9ENSG00000105321.8322.64380215.750100.580502.800902.14200HepG2MAGOH
CCDC9ENSG00000105321.8320.09350230.595300.473002.640301.89590HepG2NOL12
CCDC9ENSG00000105321.8255.02970136.204600.904802.322301.33030HepG2NONO
CCDC9ENSG00000105321.8409.03700153.781601.4112010.121008.38670HepG2PABPC1
CCDC9ENSG00000105321.8293.90480209.980100.485002.824402.21360HepG2PCBP1
CCDC9ENSG00000105321.8335.02270233.497700.520802.962302.26780HepG2PUM2
CCDC9ENSG00000105321.8511.23140313.244000.706605.943504.74630HepG2RBM15
CCDC9ENSG00000105321.8332.44680210.010400.662604.309903.48340HepG2RBM25
CCDC9ENSG00000105321.8661.02060325.911901.020103.698502.91510HepG2SF3A3
CCDC9ENSG00000105321.8336.16050218.108400.624002.131901.50720HepG2SF3B1
CCDC9ENSG00000105321.8218.92370140.419700.640602.568701.64750HepG2SMNDC1
CCDC9ENSG00000105321.8538.77990338.187100.671806.932006.23870HepG2SRFBP1
CCDC9ENSG00000105321.8245.85630147.148200.740403.130301.95560HepG2STIP1
CCDC9ENSG00000105321.8343.18580247.172800.473403.028702.38320HepG2SUCLG1
CCDC9ENSG00000105321.8214.94810149.333400.525402.056601.55700HepG2TRIM56
CCDC9ENSG00000105321.8442.45550281.829900.650604.518703.72540HepG2U2AF1
CCDC9ENSG00000105321.81732.760901060.236600.7086016.6887015.41910K562AGGF1
CCDC9ENSG00000105321.81538.501201165.137800.400904.074402.83160K562AKAP8
CCDC9ENSG00000105321.81886.269501103.248300.7737013.0378011.46520K562AKAP8L
CCDC9ENSG00000105321.81438.581201157.618700.313403.188402.20390K562ATP5C1
CCDC9ENSG00000105321.8528.98710403.076900.392102.904501.92180K562BCLAF1
CCDC9ENSG00000105321.8610.30440394.893800.628003.723002.22720K562CIRBP
CCDC9ENSG00000105321.8456.45240305.793900.577804.368203.00100K562CSTF2
CCDC9ENSG00000105321.8563.71430386.747500.543502.755201.84430K562EFTUD2
CCDC9ENSG00000105321.8263.47100394.36800-0.581903.294702.04550K562FKBP4
CCDC9ENSG00000105321.8475.35130690.38000-0.538405.448304.63870K562FXR1
CCDC9ENSG00000105321.869.24660270.20830-1.964304.809803.81810K562G3BP2
CCDC9ENSG00000105321.8524.50140308.092600.767506.779705.53880K562GPKOW
CCDC9ENSG00000105321.8619.87630454.257700.448403.164502.53180K562HNRNPC
CCDC9ENSG00000105321.8772.11860368.846301.0657011.339308.82070K562IGF2BP2
CCDC9ENSG00000105321.81517.510601170.737700.374204.122303.08870K562KIF1C
CCDC9ENSG00000105321.81443.064001120.752600.364603.690102.38610K562MAK16
CCDC9ENSG00000105321.81650.604001311.533700.331603.510202.46830K562MBNL1
CCDC9ENSG00000105321.81208.19350919.297600.394102.323001.53140K562NAA15
CCDC9ENSG00000105321.8986.31570838.965900.233302.163401.49540K562NSUN2
CCDC9ENSG00000105321.8518.68080757.01840-0.545503.853402.87230K562PCBP3
CCDC9ENSG00000105321.8394.25260580.64840-0.558504.739303.69140K562POLR2G
CCDC9ENSG00000105321.8684.61510502.062300.447303.171402.28420K562PPIG
CCDC9ENSG00000105321.8565.73990376.354800.587902.872502.10990K562PRPF8
CCDC9ENSG00000105321.8526.43400407.288800.370102.153001.36420K562PSIP1
CCDC9ENSG00000105321.81979.512801093.947200.8555013.8427012.67300K562PUS1
CCDC9ENSG00000105321.81631.193501066.029600.613604.100403.39560K562RBM15
CCDC9ENSG00000105321.8522.19730360.568300.534203.002502.12370K562RBM22
CCDC9ENSG00000105321.81080.93850827.982200.384503.425302.52330K562SF3A3
CCDC9ENSG00000105321.8546.77080280.506100.962806.938205.54440K562SF3B4
CCDC9ENSG00000105321.8580.27850368.904600.653402.798602.08900K562SRSF1
CCDC9ENSG00000105321.8571.94680348.514200.714605.101103.59550K562SRSF5
CCDC9ENSG00000105321.8427.54670582.42000-0.446003.405902.49620K562SYNCRIP
CCDC9ENSG00000105321.8769.61310373.258401.043908.407807.08850K562TARDBP
CCDC9ENSG00000105321.8675.43520360.075400.907405.976004.70260K562TIA1
CCDC9ENSG00000105321.8637.07920353.571000.849402.516501.48470K562TRA2A
CCDC9ENSG00000105321.8559.06200416.173200.425702.745401.80500K562TRIM56
CCDC9ENSG00000105321.81617.467501109.322900.544002.655301.39680K562UTP18
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CCDC9 is not available on ENCORE database.





1 RBPs can affect the splicing of CCDC9 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A5SSCCDC9ENSG00000105321.8chr19+4776181547761967477618154776192047763577477636790.067000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CCDC9 is not avaliable on ENCORE database.