C11orf80

General Information

Gene Name       : C11orf80
Gene ID             : ENSG00000173715.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C11orf80)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878C11orf80ENSG00000173715.166.538.727.62ENCSR000AEF
HepG2C11orf80ENSG00000173715.166.368.777.56ENCSR985KAT
K562C11orf80ENSG00000173715.169.397.608.50ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C11orf80 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C11orf80 RNA is bound by 19 proteins.  







eCLIP assay for C11orf80 is not avaliable on ENCORE database.





19 proteins are bound to C11orf80 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr116659580766595836+3'-UTR,CDS,intron-Proximal4.026883.02457HepG2BCLAF1
chr116659003466590115+3'-UTR,CDS,intron-Distal,intron-Proximal3.661853.01531K562YBX3
chr116661035866610463+3'-UTR,CDS4.144363.53690K562ZNF622
chr116661093266611084+3'-UTR,CDS3.8529711.21395HepG2DDX3X
chr116661026366610357+3'-UTR,CDS,intron-Proximal4.900684.40745K562SF3B4
chr116656368666563775+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.7890512.95703K562KHSRP
chr116652652566526574+5'-UTR,CDS,intron-Proximal4.281183.20743HepG2PPIG
chr116651235866512423+5'-UTR,CDS,intron-Distal,intron-Proximal5.347419.75034HepG2PRPF8
chr116660809866608178+intron-Distal4.736595.90588K562MATR3
chr116651648866516591+intron-Distal4.204638.23540K562TARDBP
chr116651653366516635+intron-Distal3.146473.35050HepG2SUGP2
chr116651679266516885+intron-Distal5.376617.52645K562TARDBP
chr116651279166512895+intron-Distal5.067425.24810K562GTF2F1
chr116651675566516852+intron-Distal4.102143.34098HepG2HNRNPM
chr116651247866512563+intron-Distal,intron-Proximal3.055924.79209K562DROSHA
chr116651278866512905+intron-Distal3.989235.55742HepG2PRPF4
chr116651285066512905+intron-Distal4.271563.93366K562RBFOX2
chr116651284466512933+intron-Distal4.6712412.30805K562CSTF2T
chr116660810366608179+intron-Distal4.724574.40618K562PTBP1
chr116651247566512551+intron-Distal,intron-Proximal3.609188.38555K562CSTF2T
chr116653419166534328+intron-Distal5.7819113.63922HepG2QKI
chr116651255166512637+intron-Distal3.676618.15128K562CSTF2T
chr116656356266563619+intron-Distal3.694063.02234K562KHSRP
chr116656805866568106+intron-Proximal4.869655.58150K562SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C11orf80 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C11orf80 is not available on ENCORE database.

  • 28 RBPs can affect the levels of C11orf80.  








The Knockdown/knockout RNA-Seq assay for C11orf80 is not available on ENCORE database.





28 RBPs can affect the gene expression of C11orf80 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C11orf80ENSG00000173715.11106.09710185.59190-0.806704.529703.71860HepG2CKAP4
C11orf80ENSG00000173715.11360.60920224.379500.684403.891703.16070HepG2DDX3X
C11orf80ENSG00000173715.11200.66450128.827700.639203.145402.40000HepG2DNAJC21
C11orf80ENSG00000173715.1189.13080144.67340-0.698802.244401.61330HepG2HNRNPC
C11orf80ENSG00000173715.11263.47170154.734500.767804.082503.10750HepG2MSI2
C11orf80ENSG00000173715.11193.56090271.43730-0.487802.647802.06480HepG2PUM1
C11orf80ENSG00000173715.11100.52290164.48100-0.710401.944201.34300HepG2RAVER1
C11orf80ENSG00000173715.11316.20360217.700300.538403.070902.53300HepG2RBM22
C11orf80ENSG00000173715.11274.19770200.374200.452401.939601.35540HepG2RPLP0
C11orf80ENSG00000173715.11445.37710245.880200.857008.903308.14480HepG2SRFBP1
C11orf80ENSG00000173715.11237.72370164.143100.534202.747302.19720HepG2SRSF9
C11orf80ENSG00000173715.11212.33800138.631000.615002.740502.06620HepG2SUPV3L1
C11orf80ENSG00000173715.11251.19740127.017200.983705.293703.88190HepG2UPF2
C11orf80ENSG00000173715.11115.60470180.88770-0.645902.283701.32330HepG2XRCC6
C11orf80ENSG00000173715.11192.89870136.466200.499202.057301.42430HepG2XRN2
C11orf80ENSG00000173715.11231.75820143.678100.689704.143103.34580HepG2ZC3H8
C11orf80ENSG00000173715.11303.47990210.194700.529803.544402.94660HepG2ZNF622
C11orf80ENSG00000173715.11171.52120307.68830-0.843104.881604.14150K562AQR
C11orf80ENSG00000173715.1182.91100173.91250-1.068705.356604.06100K562EFTUD2
C11orf80ENSG00000173715.11127.58670203.10250-0.670703.268902.62020K562FXR1
C11orf80ENSG00000173715.11103.09850185.18220-0.844903.046102.42300K562HNRNPC
C11orf80ENSG00000173715.11144.84010215.43150-0.572802.364101.46390K562PCBP2
C11orf80ENSG00000173715.1165.31510169.23630-1.373606.834605.65530K562PRPF8
C11orf80ENSG00000173715.11148.71280235.21730-0.661503.728302.96810K562PTBP1
C11orf80ENSG00000173715.11125.37070217.99970-0.798104.662103.54170K562SF3B4
C11orf80ENSG00000173715.11135.13930230.58220-0.770804.217503.35210K562SRSF1
C11orf80ENSG00000173715.11153.39400233.38410-0.605502.897002.17320K562TARDBP
C11orf80ENSG00000173715.11342.30460251.973700.441902.785702.06450K562UPF1
C11orf80ENSG00000173715.11326.24510222.852700.549802.667901.48970K562UTP3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C11orf80 is not available on ENCORE database.





8 RBPs can affect the splicing of C11orf80 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC11orf80ENSG00000173715.11chr11+6651584966515988665122066651239066526513665265670.309000.000200.05640includedK562PUM1
SEC11orf80ENSG00000173715.11chr11+6660660266606678666058406660591666610319666105400.248000.000880.01096includedK562AQR
SEC11orf80ENSG00000173715.11chr11+6660660266606678666058406660591666610319666105400.228000.000290.06218includedK562HNRNPA1
SEC11orf80ENSG00000173715.11chr11+6660660266606678666058406660591666610319666105400.318000.000560.04652includedK562SUPV3L1
SEC11orf80ENSG00000173715.11chr11+665900346659014566589113665892356659573666595835-0.149000.000730.03612excludedHepG2SFPQ
SEC11orf80ENSG00000173715.11chr11+6652954966529921665265136652656766555630665557400.254000.001290.07994includedHepG2HNRNPL
SEC11orf80ENSG00000173715.11chr11+665158496651598866512206665123906652651366526567-0.376000.001300.07735excludedK562HNRNPL
SEC11orf80ENSG00000173715.11chr11+665556306655574066526513665265676656375166563835-0.343000.004870.08670excludedHepG2SRSF1
SEC11orf80ENSG00000173715.11chr11+665158496651598866512206665123906652651366526567-0.298000.000860.07503excludedHepG2SUPV3L1
SEC11orf80ENSG00000173715.11chr11+6659618666596367665957366659583566605837666059160.126000.006420.08444includedK562HNRNPC
SEC11orf80ENSG00000173715.11chr11+665900346659014566583523665836706659573666595835-0.191000.007150.09128excludedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C11orf80 is not avaliable on ENCORE database.