RP11-744K17.9

General Information

Gene Name       : RP11-744K17.9
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RP11-744K17.9)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RP11-744K17.9 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RP11-744K17.9 RNA is bound by 3 proteins.  







eCLIP assay for RP11-744K17.9 is not avaliable on ENCORE database.





3 proteins are bound to RP11-744K17.9 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr172190698421907065+intron-Distal5.613778.37727K562YWHAG
chr172190670021906747+intron-Distal3.630954.56666K562HNRNPM
chr172190664821906744+intron-Distal,intron-Proximal5.7865249.72378K562SLTM
chr172190663321906735+intron-Distal,intron-Proximal5.0305310.77182K562YWHAG
chr172190698821907048+intron-Distal6.0515345.10680K562SLTM
chr172190782921907883+intron-Distal4.897665.77100K562SLTM
chr172190821021908281+intron-Distal4.643814.93122K562SLTM
chr172190664921906700+intron-Distal,intron-Proximal4.397484.78076K562HNRNPM
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RP11-744K17.9 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RP11-744K17.9 is not available on ENCORE database.

  • 14 RBPs can affect the levels of RP11-744K17.9.  








The Knockdown/knockout RNA-Seq assay for RP11-744K17.9 is not available on ENCORE database.





14 RBPs can affect the gene expression of RP11-744K17.9 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RP11-744K17.9ENSG00000266795.237.0148071.60420-0.951902.301801.77620K562AGGF1
RP11-744K17.9ENSG00000266795.242.8945074.50580-0.796601.895301.35060K562AKAP8L
RP11-744K17.9ENSG00000266795.257.1853028.754300.991802.044101.36150K562CPSF6
RP11-744K17.9ENSG00000266795.258.26390106.40500-0.868902.329201.46230K562EIF4G2
RP11-744K17.9ENSG00000266795.261.0567027.448701.153302.519501.75920K562GPKOW
RP11-744K17.9ENSG00000266795.2164.2106087.678600.905204.505803.35920K562HNRNPU
RP11-744K17.9ENSG00000266795.276.4868023.449901.705504.644703.39720K562KRR1
RP11-744K17.9ENSG00000266795.267.7719026.794901.338603.359102.39120K562METAP2
RP11-744K17.9ENSG00000266795.2102.9572045.320101.183704.474903.46690K562MTPAP
RP11-744K17.9ENSG00000266795.289.3896050.360100.827702.364701.67080K562NSUN2
RP11-744K17.9ENSG00000266795.223.2812050.95110-1.129902.078201.42390K562PRPF8
RP11-744K17.9ENSG00000266795.219.7178040.72520-1.046401.904001.33420K562PTBP1
RP11-744K17.9ENSG00000266795.233.1547073.90110-1.156402.573202.04510K562PUS1
RP11-744K17.9ENSG00000266795.284.5657049.684600.767202.086101.37150K562SF3A3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RP11-744K17.9 is not available on ENCORE database.






No RBPs affect the alternative splcing events of RP11-744K17.9 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for RP11-744K17.9 is not avaliable on ENCORE database.