RP11-729L2.2

General Information

Gene Name : RP11-729L2.2
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-729L2.2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-729L2.2 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-729L2.2 RNA is bound by 18 proteins.

eCLIP assay for RP11-729L2.2 is not avaliable on ENCORE database.

18 proteins are bound to RP11-729L2.2 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr18	48573602	48573672	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.31087	3.17151	K562	UCHL5
chr18	48575146	48575257	+	3'-UTR,CDS,intron-Proximal	3.26162	6.80151	HepG2	BCLAF1
chr18	48581161	48581373	+	3'-UTR,CDS,intron-Proximal	3.02736	3.85159	HepG2	UCHL5
chr18	48573589	48573669	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.43844	7.74581	HepG2	BCLAF1
chr18	48575661	48575730	+	3'-UTR,CDS,intron-Proximal	5.17507	5.05356	HepG2	PRPF8
chr18	48575228	48575271	+	3'-UTR,CDS,intron-Proximal	4.73482	3.62536	K562	AQR
chr18	48581256	48581263	+	3'-UTR,CDS	3.72266	5.73361	K562	YBX3
chr18	48581263	48581288	+	3'-UTR,CDS	3.74955	9.26008	K562	YBX3
chr18	48575626	48575711	+	3'-UTR,CDS,intron-Proximal	4.53584	7.50107	K562	AQR
chr18	48581288	48581329	+	3'-UTR,CDS	3.53133	9.83933	K562	YBX3
chr18	48575649	48575709	+	3'-UTR,CDS,intron-Proximal	5.10313	7.46464	K562	PRPF8
chr18	48573465	48573526	+	3'-UTR,CDS,intron-Distal	3.92259	5.06180	HepG2	BCLAF1
chr18	48581094	48581192	+	3'-UTR,CDS,intron-Proximal	5.36965	6.40247	K562	SF3B4
chr18	48573420	48573465	+	3'-UTR,CDS,intron-Distal	3.58355	3.57857	HepG2	BCLAF1
chr18	48567415	48567474	+	intron-Distal	4.43455	4.58231	HepG2	HNRNPK
chr18	48581018	48581107	+	intron-Distal,intron-Proximal	3.38126	4.74253	K562	KHSRP
chr18	48561544	48561631	+	intron-Distal	4.79331	10.89104	HepG2	PTBP1
chr18	48556999	48557063	+	intron-Distal,intron-Proximal	4.14920	4.66211	HepG2	XRN2
chr18	48557394	48557469	+	intron-Distal	3.10016	3.05068	HepG2	U2AF2
chr18	48556929	48556987	+	5'-UTR,intron-Distal	5.44884	5.58036	HepG2	EFTUD2
chr18	48561497	48561544	+	intron-Distal	3.70036	6.41195	HepG2	PTBP1
chr18	48557004	48557060	+	intron-Distal,intron-Proximal	4.46818	8.44359	HepG2	EFTUD2
chr18	48575463	48575611	+	intron-Distal,intron-Proximal	3.52289	5.57010	K562	KHSRP
chr18	48556819	48556946	+	5'-UTR,intron-Distal	3.51662	20.03640	HepG2	DDX3X
chr18	48561512	48561586	+	intron-Distal	3.95082	4.57279	K562	PTBP1
chr18	48556701	48556789	+	5'-UTR,intron-Distal,intron-Proximal	3.16863	6.63304	K562	DROSHA
chr18	48565507	48565608	+	intron-Distal	3.54463	5.35459	K562	KHSRP
chr18	48559573	48559620	+	intron-Distal	3.90544	3.84404	HepG2	HNRNPC
chr18	48570506	48570557	+	intron-Distal	4.33285	3.35169	HepG2	U2AF2
chr18	48556758	48556800	+	5'-UTR,intron-Distal	4.25135	6.08301	HepG2	EFTUD2
chr18	48557074	48557151	+	intron-Distal,intron-Proximal	3.57715	5.19517	HepG2	EFTUD2
chr18	48556870	48556903	+	5'-UTR,intron-Distal	3.50072	4.12229	HepG2	EFTUD2
chr18	48556694	48556819	+	5'-UTR,intron-Distal,intron-Proximal	3.12950	19.54534	HepG2	DDX3X
chr18	48566865	48567007	+	intron-Distal	3.63523	4.64467	HepG2	HNRNPL
chr18	48572255	48572347	+	intron-Distal	4.31662	4.31512	K562	KHSRP
chr18	48577790	48577932	+	intron-Distal,intron-Proximal	4.49905	6.28383	K562	KHSRP
chr18	48568696	48568778	+	intron-Distal	5.83583	9.42242	HepG2	PCBP2
chr18	48575712	48575784	+	intron-Proximal	3.03136	4.31458	HepG2	TIAL1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP11-729L2.2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RP11-729L2.2 is not available on ENCORE database.
2 RBPs can affect the levels of RP11-729L2.2.

The Knockdown/knockout RNA-Seq assay for RP11-729L2.2 is not available on ENCORE database.

2 RBPs can affect the gene expression of RP11-729L2.2 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP11-729L2.2	ENSG00000267699.2	0.00000	6.55120	-99999.99999	2.02940	1.49700	HepG2	ETF1
RP11-729L2.2	ENSG00000267699.2	0.00000	6.18330	-99999.99999	1.84610	1.41160	HepG2	SRFBP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RP11-729L2.2 is not available on ENCORE database.

9 RBPs can affect the splicing of RP11-729L2.2 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RP11-729L2.2	ENSG00000267699.2	chr18	+	48575664	48575694	48575071	48575230	48581150	48581363	-0.27700	0.00002	0.00083	excluded	K562	SF3B4
SE	RP11-729L2.2	ENSG00000267699.2	chr18	+	48579004	48579095	48575664	48575694	48581150	48581363	0.06500	0.00002	0.02217	included	K562	UTP3
SE	RP11-729L2.2	ENSG00000267699.2	chr18	+	48579004	48579095	48575664	48575694	48581150	48581363	0.08600	0.00000	0.00042	included	HepG2	TBRG4
SE	RP11-729L2.2	ENSG00000267699.2	chr18	+	48575664	48575694	48575055	48575230	48581150	48581363	-0.11200	0.00271	0.02816	excluded	K562	AQR
SE	RP11-729L2.2	ENSG00000267699.2	chr18	+	48575664	48575694	48575055	48575230	48581150	48581363	-0.08300	0.00182	0.02780	excluded	K562	PUS1
SE	RP11-729L2.2	ENSG00000267699.2	chr18	+	48579004	48579095	48575664	48575694	48581150	48581363	0.05300	0.00025	0.04686	included	HepG2	RBM15
SE	RP11-729L2.2	ENSG00000267699.2	chr18	+	48575664	48575694	48575055	48575230	48581150	48581363	-0.10900	0.00008	0.03013	excluded	HepG2	CDC40
SE	RP11-729L2.2	ENSG00000267699.2	chr18	+	48579004	48579095	48575664	48575694	48581150	48581363	0.06800	0.00132	0.03785	included	HepG2	SF3A3
SE	RP11-729L2.2	ENSG00000267699.2	chr18	+	48575664	48575694	48575055	48575230	48581150	48581363	-0.23100	0.00000	0.00002	excluded	HepG2	SF3A3
SE	RP11-729L2.2	ENSG00000267699.2	chr18	+	48575664	48575694	48575055	48575230	48581150	48581363	-0.19200	0.00081	0.01672	excluded	K562	U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-729L2.2

General Information

Functions

Localization

Domains (AlphaFold: RP11-729L2.2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-729L2.2 is not avaliable on ENCORE database.

18 proteins are bound to RP11-729L2.2 RNA:

eCLIP assay for RP11-729L2.2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-729L2.2 is not available on ENCORE database.

2 RBPs can affect the gene expression of RP11-729L2.2 :

The Knockdown/knockout RNA-Seq assay for RP11-729L2.2 is not available on ENCORE database.

9 RBPs can affect the splicing of RP11-729L2.2 :

The Knockdown/knockout RNA-Seq assay for RP11-729L2.2 is not avaliable on ENCORE database.