RP11-729L2.2

General Information

Gene Name : RP11-729L2.2
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-729L2.2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-729L2.2 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-729L2.2 RNA is bound by 18 proteins.

CanvasJS.com

eCLIP assay for RP11-729L2.2 is not avaliable on ENCORE database.

18 proteins are bound to RP11-729L2.2 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr18	48556819	48556946	+	5'-UTR,intron-Distal	3.51662	20.03640	HepG2	DDX3X
chr18	48556694	48556819	+	5'-UTR,intron-Distal,intron-Proximal	3.12950	19.54534	HepG2	DDX3X
chr18	48561544	48561631	+	intron-Distal	4.79331	10.89104	HepG2	PTBP1
chr18	48581288	48581329	+	3'-UTR,CDS	3.53133	9.83933	K562	YBX3
chr18	48568696	48568778	+	intron-Distal	5.83583	9.42242	HepG2	PCBP2
chr18	48581263	48581288	+	3'-UTR,CDS	3.74955	9.26008	K562	YBX3
chr18	48557004	48557060	+	intron-Distal,intron-Proximal	4.46818	8.44359	HepG2	EFTUD2
chr18	48573589	48573669	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.43844	7.74581	HepG2	BCLAF1
chr18	48575626	48575711	+	3'-UTR,CDS,intron-Proximal	4.53584	7.50107	K562	AQR
chr18	48575649	48575709	+	3'-UTR,CDS,intron-Proximal	5.10313	7.46464	K562	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 38 entries

eCLIP assay for RP11-729L2.2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RP11-729L2.2 is not available on ENCORE database.
2 RBPs can affect the levels of RP11-729L2.2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RP11-729L2.2 is not available on ENCORE database.

2 RBPs can affect the gene expression of RP11-729L2.2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP11-729L2.2	ENSG00000267699.2	0.00000	6.55120	-99999.99999	2.02940	1.49700	HepG2	ETF1
RP11-729L2.2	ENSG00000267699.2	0.00000	6.18330	-99999.99999	1.84610	1.41160	HepG2	SRFBP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 2 of 2 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RP11-729L2.2 is not available on ENCORE database.

9 RBPs can affect the splicing of RP11-729L2.2 :

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Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RP11-729L2.2	ENSG00000267699.2	chr18	+	48579004	48579095	48575664	48575694	48581150	48581363	0.08600	0.00000	0.00042	included	HepG2	TBRG4
SE	RP11-729L2.2	ENSG00000267699.2	chr18	+	48575664	48575694	48575055	48575230	48581150	48581363	-0.23100	0.00000	0.00002	excluded	HepG2	SF3A3
SE	RP11-729L2.2	ENSG00000267699.2	chr18	+	48575664	48575694	48575071	48575230	48581150	48581363	-0.27700	0.00002	0.00083	excluded	K562	SF3B4
SE	RP11-729L2.2	ENSG00000267699.2	chr18	+	48579004	48579095	48575664	48575694	48581150	48581363	0.06500	0.00002	0.02217	included	K562	UTP3
SE	RP11-729L2.2	ENSG00000267699.2	chr18	+	48575664	48575694	48575055	48575230	48581150	48581363	-0.10900	0.00008	0.03013	excluded	HepG2	CDC40
SE	RP11-729L2.2	ENSG00000267699.2	chr18	+	48579004	48579095	48575664	48575694	48581150	48581363	0.05300	0.00025	0.04686	included	HepG2	RBM15
SE	RP11-729L2.2	ENSG00000267699.2	chr18	+	48575664	48575694	48575055	48575230	48581150	48581363	-0.19200	0.00081	0.01672	excluded	K562	U2AF2
SE	RP11-729L2.2	ENSG00000267699.2	chr18	+	48579004	48579095	48575664	48575694	48581150	48581363	0.06800	0.00132	0.03785	included	HepG2	SF3A3
SE	RP11-729L2.2	ENSG00000267699.2	chr18	+	48575664	48575694	48575055	48575230	48581150	48581363	-0.08300	0.00182	0.02780	excluded	K562	PUS1
SE	RP11-729L2.2	ENSG00000267699.2	chr18	+	48575664	48575694	48575055	48575230	48581150	48581363	-0.11200	0.00271	0.02816	excluded	K562	AQR

Showing 1 to 10 of 10 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-729L2.2

General Information

Functions

Localization

Domains (AlphaFold: RP11-729L2.2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-729L2.2 is not avaliable on ENCORE database.

18 proteins are bound to RP11-729L2.2 RNA:

eCLIP assay for RP11-729L2.2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-729L2.2 is not available on ENCORE database.

2 RBPs can affect the gene expression of RP11-729L2.2 :

The Knockdown/knockout RNA-Seq assay for RP11-729L2.2 is not available on ENCORE database.

9 RBPs can affect the splicing of RP11-729L2.2 :

The Knockdown/knockout RNA-Seq assay for RP11-729L2.2 is not avaliable on ENCORE database.