RP11-65J21.3

General Information

Gene Name       : RP11-65J21.3
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RP11-65J21.3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RP11-65J21.3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RP11-65J21.3 RNA is bound by 6 proteins.  







eCLIP assay for RP11-65J21.3 is not avaliable on ENCORE database.





6 proteins are bound to RP11-65J21.3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr161439715414397207+intron-Distal6.030217.64819K562DROSHA
chr161439755614397596+intron-Distal4.106233.06140HepG2NKRF
chr161439798914398081+intron-Distal4.8296518.71309HepG2DROSHA
chr161439766814397706+intron-Distal6.1748317.30239HepG2DGCR8
chr161439646814396567+intron-Distal,intron-Proximal3.1764711.73876HepG2NKRF
chr161439789614397899+intron-Distal5.048468.27064HepG2DGCR8
chr161440361614403654+intron-Distal4.542845.64979HepG2DGCR8
chr161440351514403550+intron-Distal4.272563.48031HepG2DGCR8
chr161440323014403282+intron-Distal4.857525.89204HepG2DGCR8
chr161440322814403281+intron-Distal4.407865.70204HepG2DROSHA
chr161439753714397616+intron-Distal5.0787820.51875HepG2DROSHA
chr161439714414397204+intron-Distal5.2245517.68107HepG2DGCR8
chr161439779114397837+intron-Distal5.741179.81295HepG2DROSHA
chr161439773114397791+intron-Distal5.6020210.33113HepG2DROSHA
chr161439658814396695+intron-Distal4.6101319.40206HepG2DROSHA
chr161439794014397986+intron-Distal6.1741316.30485HepG2DGCR8
chr161439808114398148+intron-Distal5.0490614.41289HepG2DROSHA
chr161439714814397222+intron-Distal3.8746111.24708HepG2DROSHA
chr161440264714402685+intron-Distal3.173113.12788HepG2DGCR8
chr161439659914396648+intron-Distal3.950213.56577HepG2XRN2
chr161439844414398484+intron-Distal3.313794.77888HepG2DROSHA
chr161439714714397183+intron-Distal4.430874.19577K562DGCR8
chr161439783914397854+intron-Distal4.4916610.71583HepG2DGCR8
chr161439663414396695+intron-Distal3.116463.59357HepG2NKRF
chr161440317514403225+intron-Distal4.829405.11833K562DGCR8
chr161439786614397896+intron-Distal9.25816170.57771HepG2DGCR8
chr161439807514398127+intron-Distal4.9298015.21803HepG2DGCR8
chr161439802914398113+intron-Distal5.2446410.12417K562DROSHA
chr161439788814397895+intron-Distal7.0821433.44671K562DGCR8
chr161440309014403175+intron-Distal4.8603115.21803HepG2DGCR8
chr161439673014396764+intron-Distal4.047363.91243HepG2NKRF
chr161439649214396568+intron-Distal,intron-Proximal4.944907.71942K562DROSHA
chr161439772914397786+intron-Distal6.4469024.16395HepG2DGCR8
chr161440318214403217+intron-Distal5.9471613.93835HepG2DGCR8
chr161440366014403728+intron-Distal4.887496.58723HepG2DGCR8
chr161439650014396603+intron-Distal,intron-Proximal5.5722918.62836HepG2DGCR8
chr161439648414396588+intron-Distal,intron-Proximal4.3978720.77874HepG2DROSHA
chr161439749614397544+intron-Distal5.4460421.06100HepG2DGCR8
chr161439800514398042+intron-Distal4.9634915.75039HepG2DGCR8
chr161439778614397839+intron-Distal6.1545639.29227HepG2DGCR8
chr161439744214397494+intron-Distal3.916786.66046HepG2DROSHA
chr161439785414397865+intron-Distal5.5540311.99999HepG2DGCR8
chr161439725514397316+intron-Distal3.561933.57490HepG2NKRF
chr161439749414397537+intron-Distal5.5693810.33113HepG2DROSHA
chr161439726414397321+intron-Distal6.1328020.00211HepG2DGCR8
chr161439744214397489+intron-Distal5.2674918.37709HepG2DGCR8
chr161439766414397704+intron-Distal3.422677.41171HepG2DROSHA
chr161440187514401909+intron-Distal4.562125.15091HepG2DGCR8
chr161441945814419512+intron-Distal4.318273.35850HepG2TIAL1
chr161439725814397332+intron-Distal6.1605014.93424HepG2DROSHA
chr161439680414396829+intron-Distal5.232979.71896HepG2DGCR8
chr161439763414397664+intron-Distal4.028156.62987HepG2DROSHA
chr161439786714397888+intron-Distal7.1427135.00914K562DGCR8
chr161439790014397977+intron-Distal5.715195.19464K562DROSHA
chr161440355014403609+intron-Distal4.920296.58723HepG2DGCR8
chr161439754414397618+intron-Distal5.5303428.40297HepG2DGCR8
chr161440237814402417+intron-Distal4.203814.15808HepG2DGCR8
chr161440290314402944+intron-Distal4.633795.89204HepG2DGCR8
chr161439779314397831+intron-Distal4.890606.41859K562DGCR8
chr161440480314404857+intron-Distal4.134228.13166HepG2XPO5
chr161440331514403377+intron-Distal3.412936.27327HepG2DGCR8
chr161440353814403585+intron-Distal3.169033.98694HepG2DROSHA
chr161439726014397315+intron-Distal5.727966.82579K562DROSHA
chr161440289414402977+intron-Distal3.150705.00137HepG2DROSHA
chr161440308514403161+intron-Distal4.022828.00307HepG2DROSHA
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RP11-65J21.3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RP11-65J21.3 is not available on ENCORE database.

  • 12 RBPs can affect the levels of RP11-65J21.3.  








The Knockdown/knockout RNA-Seq assay for RP11-65J21.3 is not available on ENCORE database.





12 RBPs can affect the gene expression of RP11-65J21.3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RP11-65J21.3ENSG00000262454.15.4674020.68010-1.919302.279601.66660HepG2CKAP4
RP11-65J21.3ENSG00000262454.15.9983026.19480-2.126602.745101.98390HepG2CNOT7
RP11-65J21.3ENSG00000262454.137.3648011.386201.714302.759002.14210HepG2DDX6
RP11-65J21.3ENSG00000262454.15.6479020.21340-1.839502.052301.33480HepG2EWSR1
RP11-65J21.3ENSG00000262454.13.3085016.77950-2.342501.935301.46260HepG2PTBP1
RP11-65J21.3ENSG00000262454.14.4501021.07720-2.243802.803302.18470HepG2PUS1
RP11-65J21.3ENSG00000262454.14.5971018.17410-1.983101.882301.35220HepG2QKI
RP11-65J21.3ENSG00000262454.14.3597017.47090-2.002701.855501.35490HepG2SF3B4
RP11-65J21.3ENSG00000262454.130.7062011.898601.367601.744001.31800HepG2SRFBP1
RP11-65J21.3ENSG00000262454.135.0335014.835001.239602.006601.52190HepG2SRSF9
RP11-65J21.3ENSG00000262454.110.2527038.35250-1.903303.200002.05490HepG2TBRG4
RP11-65J21.3ENSG00000262454.132.9589014.889901.146201.769501.30600HepG2ZNF622
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RP11-65J21.3 is not available on ENCORE database.






No RBPs affect the alternative splcing events of RP11-65J21.3 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for RP11-65J21.3 is not avaliable on ENCORE database.