RP11-2C24.4

General Information

Gene Name       : RP11-2C24.4
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RP11-2C24.4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RP11-2C24.4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RP11-2C24.4 RNA is bound by 12 proteins.  







eCLIP assay for RP11-2C24.4 is not avaliable on ENCORE database.





12 proteins are bound to RP11-2C24.4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr163075997530760129+5'-UTR,intron-Distal,intron-Proximal4.8963210.06682HepG2DDX59
chr163076217630762304+intron-Distal4.540824.94581HepG2LSM11
chr163076047230760630+intron-Distal5.544815.04820K562ZRANB2
chr163075987630760012+5'-UTR,intron-Distal,intron-Proximal4.565765.33511HepG2HNRNPK
chr163076104630761106+intron-Distal4.391043.14668HepG2LSM11
chr163075507430755255+3'-UTR,intron-Distal,intron-Proximal3.988143.46058HepG2PABPN1
chr163075987930759972+5'-UTR,intron-Distal,intron-Proximal4.882384.97123HepG2PCBP2
chr163076040030760448+intron-Distal4.906043.46839K562ZRANB2
chr163076047430760613+intron-Distal4.330105.34978HepG2PRPF8
chr163076053430760601+intron-Distal5.118468.16219HepG2LSM11
chr163076080530760896+intron-Distal5.096036.54234HepG2LSM11
chr163075510430755193+3'-UTR,intron-Distal4.310634.22051K562UPF1
chr163075978930759813+5'-UTR,intron-Proximal4.355624.52089HepG2NCBP2
chr163076021230760266+CDS,intron-Proximal4.125783.14668HepG2LSM11
chr163075317430753230+3'-UTR,intron-Proximal4.078933.54010K562UPF1
chr163075205230752110+intron-Proximal3.907447.49348HepG2RBM22
chr163076242230762474+CDS,intron-Proximal3.722425.03105K562BUD13
chr163076241330762475+CDS,intron-Proximal3.130649.22286HepG2BUD13
chr163076020930760237+CDS,intron-Proximal3.865229.02617HepG2PPIG
chr163075195930752029+3'-UTR,intron-Proximal4.450683.87930K562UPF1
chr163076242530762474+CDS,intron-Proximal4.3023715.51278HepG2PPIG
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RP11-2C24.4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RP11-2C24.4 is not available on ENCORE database.

  • 7 RBPs can affect the levels of RP11-2C24.4.  








The Knockdown/knockout RNA-Seq assay for RP11-2C24.4 is not available on ENCORE database.





7 RBPs can affect the gene expression of RP11-2C24.4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RP11-2C24.4ENSG00000260899.17.319100.0000099999.999901.872601.34510HepG2NCBP2
RP11-2C24.4ENSG00000260899.119.762100.790004.644602.224201.68860K562AQR
RP11-2C24.4ENSG00000260899.17.597300.0000099999.999902.228301.63350K562DDX47
RP11-2C24.4ENSG00000260899.112.594200.0000099999.999903.705901.40480K562CCAR2
RP11-2C24.4ENSG00000260899.120.247700.0000099999.999905.940204.74980K562PUF60
RP11-2C24.4ENSG00000260899.19.802700.0000099999.999902.763002.04430K562UPF1
RP11-2C24.4ENSG00000260899.110.866200.891703.607002.326201.54630K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RP11-2C24.4 is not available on ENCORE database.






No RBPs affect the alternative splcing events of RP11-2C24.4 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for RP11-2C24.4 is not avaliable on ENCORE database.