RP11-201K10.3

General Information

Gene Name : RP11-201K10.3
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-201K10.3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-201K10.3 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-201K10.3 RNA is bound by 17 proteins.

eCLIP assay for RP11-201K10.3 is not avaliable on ENCORE database.

17 proteins are bound to RP11-201K10.3 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	155145052	155145105	-	CDS,intron-Distal,intron-Proximal	3.84418	14.74110	K562	PABPC4
chr1	155141908	155142038	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.86536	10.61473	HepG2	GRWD1
chr1	155141969	155142003	-	CDS,intron-Distal	3.80560	61.58727	K562	YBX3
chr1	155142266	155142307	-	CDS,intron-Distal,intron-Proximal	3.25776	18.61343	K562	YBX3
chr1	155142003	155142037	-	CDS,intron-Distal	3.83741	59.52941	K562	YBX3
chr1	155142266	155142303	-	CDS,intron-Distal,intron-Proximal	3.30210	5.41399	K562	IGF2BP2
chr1	155142004	155142037	-	CDS,intron-Distal	3.71006	3.06406	HepG2	IGF2BP1
chr1	155141939	155141969	-	CDS,intron-Distal,intron-Proximal	4.31229	26.43057	K562	YBX3
chr1	155145271	155145309	-	CDS,intron-Distal,intron-Proximal	3.15294	5.66231	K562	PABPC4
chr1	155145330	155145369	-	CDS,intron-Distal,intron-Proximal	5.17690	19.82272	K562	DDX3X
chr1	155141915	155141970	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.47709	27.50815	K562	IGF2BP2
chr1	155142311	155142347	-	CDS,intron-Distal,intron-Proximal	4.69057	4.12401	HepG2	U2AF2
chr1	155145211	155145251	-	CDS,intron-Distal,intron-Proximal	3.62509	6.22806	K562	PABPC4
chr1	155145040	155145071	-	CDS,intron-Distal,intron-Proximal	5.34682	4.32365	K562	PCBP1
chr1	155145265	155145376	-	CDS,intron-Distal,intron-Proximal	4.56570	5.85562	K562	GEMIN5
chr1	155141915	155142037	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.05548	10.60331	K562	IGF2BP1
chr1	155145266	155145297	-	CDS,intron-Distal,intron-Proximal	4.47824	3.99162	HepG2	DDX3X
chr1	155145339	155145425	-	CDS,intron-Distal,intron-Proximal	5.32045	7.91936	K562	SF3B4
chr1	155141999	155142020	-	CDS,intron-Distal	3.54052	6.98710	K562	IGF2BP2
chr1	155145243	155145324	-	CDS,intron-Distal,intron-Proximal	3.41441	24.77932	K562	DDX3X
chr1	155145321	155145366	-	CDS,intron-Distal,intron-Proximal	3.38653	4.84415	HepG2	DDX3X
chr1	155145367	155145416	-	CDS,intron-Distal,intron-Proximal	6.24245	7.66684	HepG2	SF3A3
chr1	155141970	155141999	-	CDS,intron-Distal	4.93793	22.63718	K562	IGF2BP2
chr1	155143087	155143189	-	intron-Distal	5.18649	7.19009	HepG2	U2AF2
chr1	155145696	155145746	-	CDS,intron-Distal,intron-Proximal	5.29921	23.04581	K562	DDX3X
chr1	155151106	155151226	-	intron-Distal	3.98685	3.16310	HepG2	CSTF2T
chr1	155145649	155145714	-	CDS,intron-Distal,intron-Proximal	5.28459	7.28294	K562	AQR
chr1	155145593	155145697	-	intron-Distal,intron-Proximal	3.73746	5.15405	HepG2	PRPF4
chr1	155151289	155151384	-	intron-Distal	3.80308	3.05512	HepG2	PRPF4
chr1	155147284	155147503	-	intron-Distal	4.36580	4.36307	HepG2	HNRNPK
chr1	155145402	155145641	-	intron-Distal,intron-Proximal	3.22650	5.43415	K562	RBFOX2
chr1	155145372	155145431	-	intron-Distal,intron-Proximal	3.69889	9.40935	HepG2	SF3B4
chr1	155145397	155145593	-	intron-Distal,intron-Proximal	4.60064	16.76009	HepG2	PRPF4
chr1	155144947	155145034	-	intron-Distal,intron-Proximal	3.42343	4.98422	K562	PRPF8
chr1	155145695	155145745	-	CDS,intron-Distal,intron-Proximal	3.66078	5.84843	HepG2	DDX3X
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP11-201K10.3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RP11-201K10.3 is not available on ENCORE database.
1 RBPs can affect the levels of RP11-201K10.3.

The Knockdown/knockout RNA-Seq assay for RP11-201K10.3 is not available on ENCORE database.

1 RBPs can affect the gene expression of RP11-201K10.3 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP11-201K10.3	ENSG00000273088.1	6.01420	0.00000	99999.99990	1.98290	1.42170	HepG2	CELF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RP11-201K10.3 is not available on ENCORE database.

2 RBPs can affect the splicing of RP11-201K10.3 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
RI	RP11-201K10.3	ENSG00000273088.1	chr1	-	155145040	155145368			155145040	155145104	155145213	155145368	0.08200	0.00000	0.00002	included	HepG2	SF3B4
MXE	RP11-201K10.3	ENSG00000273088.1	chr1	-	155142266	155142333	155145040	155145104	155141884	155142036	155145213	155145368	0.13100	0.00000	0.00007	1included	K562	PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-201K10.3

General Information

Functions

Localization

Domains (AlphaFold: RP11-201K10.3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-201K10.3 is not avaliable on ENCORE database.

17 proteins are bound to RP11-201K10.3 RNA:

eCLIP assay for RP11-201K10.3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-201K10.3 is not available on ENCORE database.

1 RBPs can affect the gene expression of RP11-201K10.3 :

The Knockdown/knockout RNA-Seq assay for RP11-201K10.3 is not available on ENCORE database.

2 RBPs can affect the splicing of RP11-201K10.3 :

The Knockdown/knockout RNA-Seq assay for RP11-201K10.3 is not avaliable on ENCORE database.