HOXC9

General Information

Gene Name       : HOXC9
Gene ID             : ENSG00000180806.4
Essential Gene : No

Functions

Localization

Domains (AlphaFold: HOXC9)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878HOXC9ENSG00000180806.40.000.020.01ENCSR000AEF
HepG2HOXC9ENSG00000180806.40.300.900.60ENCSR985KAT
K562HOXC9ENSG00000180806.46.366.686.52ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for HOXC9 is not avaliable on ENCORE database.



Proteins bound to RNA
  • HOXC9 RNA is bound by 11 proteins.  







eCLIP assay for HOXC9 is not avaliable on ENCORE database.





11 proteins are bound to HOXC9 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr125439661654396719+3'-UTR,intron-Distal3.167564.12241K562SAFB2
chr125439641554396500+3'-UTR,CDS,intron-Distal3.840746.11943K562UCHL5
chr125439663254396715+3'-UTR,intron-Distal3.515654.02206K562CSTF2T
chr125439660754396714+3'-UTR,intron-Distal4.554386.73547K562FUS
chr125439663754396713+3'-UTR,intron-Distal3.858993.24706K562NOLC1
chr125439412454394196+CDS,intron-Distal4.252163.98553K562NONO
chr125439615754396223+CDS,intron-Distal,intron-Proximal3.469436.71722K562SF3B4
chr125439146154391575+intron-Distal5.3655110.52606K562PTBP1
chr125438958354389643+intron-Distal4.785246.90606K562EWSR1
chr125438910554389196+intron-Distal3.783014.51839K562EWSR1
chr125439249254392583+intron-Distal4.331545.04359K562HNRNPK
chr125439360054393704+intron-Distal3.848023.74713K562FUS
chr125439382654393889+intron-Distal,intron-Proximal4.463055.40707K562CSTF2T
chr125439015554390248+intron-Distal4.3821510.30731K562CSTF2T
chr125439295554393034+intron-Distal3.030783.31456K562TIA1
chr125439015354390246+intron-Distal3.959223.74713K562FUS
chr125438921854389277+intron-Distal4.400134.23759K562NONO
chr125438977954389935+intron-Distal3.063835.77407K562FUS
chr125438976954389861+intron-Distal4.842974.75718K562EWSR1
chr125438902454389166+intron-Distal4.117544.16295K562FUS
chr125439040854390479+intron-Distal3.942636.60022K562EWSR1
chr125438978554389897+intron-Distal3.885473.12651K562SAFB2
chr125438979154389853+intron-Distal4.173227.11359K562CSTF2T
chr125438985354389899+intron-Distal4.174354.49655K562CSTF2T
chr125439295354393045+intron-Distal3.551087.28606K562CSTF2T
chr125439004654390092+intron-Distal3.568764.20405K562EWSR1
chr125439468754394738+intron-Distal3.862393.37414K562CSTF2T
chr125439297254393038+intron-Distal4.361244.75718K562EWSR1
chr125438944954389537+intron-Distal3.628763.19850K562FUS
chr125439032354390395+intron-Distal3.595583.99385K562CSTF2T
chr125438945954389509+intron-Distal4.377094.16830K562EWSR1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for HOXC9 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for HOXC9 is not available on ENCORE database.

  • 20 RBPs can affect the levels of HOXC9.  








The Knockdown/knockout RNA-Seq assay for HOXC9 is not available on ENCORE database.





20 RBPs can affect the gene expression of HOXC9 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
HOXC9ENSG00000180806.449.8823011.912902.065903.288602.71510HepG2AKAP1
HOXC9ENSG00000180806.422.683305.469402.052102.588001.84310HepG2AKAP8L
HOXC9ENSG00000180806.432.433705.442002.575204.685703.86440HepG2CKAP4
HOXC9ENSG00000180806.447.3269011.405802.052804.121003.37050HepG2DDX3X
HOXC9ENSG00000180806.418.799603.230602.540702.586001.51320HepG2GRSF1
HOXC9ENSG00000180806.432.471707.850702.048203.152002.43590HepG2PUM2
HOXC9ENSG00000180806.437.036708.627402.101903.630003.05820HepG2RBM22
HOXC9ENSG00000180806.428.591809.743001.553102.003601.55630HepG2SRFBP1
HOXC9ENSG00000180806.428.290407.117001.990902.350101.76670HepG2U2AF1
HOXC9ENSG00000180806.4186.08680124.876300.575402.395901.78730K562AKAP8L
HOXC9ENSG00000180806.4240.23160126.747600.922404.616403.89350K562AQR
HOXC9ENSG00000180806.4209.22150143.407100.544802.549701.42810K562CCDC124
HOXC9ENSG00000180806.4154.73340104.828100.561702.128201.48290K562EIF2S2
HOXC9ENSG00000180806.4225.34560139.708100.689603.082302.28730K562GRSF1
HOXC9ENSG00000180806.4186.98870100.758300.892002.530601.37960K562HNRNPA2B1
HOXC9ENSG00000180806.4178.8431099.898200.840104.298103.17630K562HNRNPU
HOXC9ENSG00000180806.4242.98230154.216000.655802.933702.11500K562HSPD1
HOXC9ENSG00000180806.4196.53490124.792600.655203.103702.24910K562MTPAP
HOXC9ENSG00000180806.4228.32180138.666800.719304.220003.31970K562NSUN2
HOXC9ENSG00000180806.4199.5047088.089301.179304.046502.79170K562PABPN1
HOXC9ENSG00000180806.4277.59820176.753600.651203.472602.39750K562PUM2
HOXC9ENSG00000180806.4225.95500123.823600.867604.577203.90220K562PUS1
HOXC9ENSG00000180806.4183.92540120.663500.608002.682502.09740K562RBM15
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for HOXC9 is not available on ENCORE database.






No RBPs affect the alternative splcing events of HOXC9 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for HOXC9 is not avaliable on ENCORE database.