CCT6P1

General Information

Gene Name       : CCT6P1
Gene ID             : ENSG00000228409.6
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CCT6P1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CCT6P1ENSG00000228409.67.275.736.50ENCSR000AEF
HepG2CCT6P1ENSG00000228409.64.225.624.92ENCSR985KAT
K562CCT6P1ENSG00000228409.65.666.446.05ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CCT6P1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CCT6P1 RNA is bound by 10 proteins.  







eCLIP assay for CCT6P1 is not avaliable on ENCORE database.





10 proteins are bound to CCT6P1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr76522056865220582+intron-Distal4.72976400.00000HepG2DKC1
chr76522061465220626+intron-Distal3.86827400.00000HepG2DKC1
chr76522053665220549+intron-Distal3.88872400.00000HepG2DKC1
chr76522059065220595+intron-Distal4.70569400.00000HepG2DKC1
chr76521635665216447+intron-Distal,intron-Proximal4.823078.79061HepG2EFTUD2
chr76522058265220590+intron-Distal4.70999400.00000HepG2DKC1
chr76522059565220613+intron-Distal4.80676400.00000HepG2DKC1
chr76522153165221618+intron-Proximal3.275013.78727K562PRPF8
chr76521626065216329+intron-Proximal3.083566.60804HepG2PRPF8
chr76522538965225454+intron-Proximal3.908865.18845HepG2U2AF2
chr76522825865228321+intron-Proximal4.978455.74423HepG2BUD13
chr76521627565216337+intron-Proximal4.590389.23607HepG2EFTUD2
chr76522079765220840+intron-Proximal3.857873.11168K562ZNF622
chr76522152465221584+intron-Proximal4.310054.04372HepG2BCLAF1
chr76522539165225453+intron-Proximal4.540714.52374K562U2AF2
chr76522826265228302+intron-Proximal4.308414.50440HepG2PPIG
chr76522539365225456+intron-Proximal4.454293.07225K562U2AF1
chr76522156065221570+intron-Proximal3.290346.69302K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CCT6P1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CCT6P1 is not available on ENCORE database.

  • 15 RBPs can affect the levels of CCT6P1.  








The Knockdown/knockout RNA-Seq assay for CCT6P1 is not available on ENCORE database.





15 RBPs can affect the gene expression of CCT6P1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CCT6P1ENSG00000228409.144.2233087.12280-0.978202.343501.84970HepG2AKAP1
CCT6P1ENSG00000228409.1187.84480105.896700.826804.321703.31950HepG2EIF4G1
CCT6P1ENSG00000228409.1140.8520072.440000.959203.557102.80100HepG2IGF2BP2
CCT6P1ENSG00000228409.1123.6744076.892800.685501.965501.40820HepG2MAGOH
CCT6P1ENSG00000228409.1106.3562056.832600.904003.245202.59710HepG2PCBP1
CCT6P1ENSG00000228409.1113.8874062.627900.862602.833202.20260HepG2QKI
CCT6P1ENSG00000228409.1163.42100109.730300.574502.236001.75670HepG2RBM22
CCT6P1ENSG00000228409.1138.2249056.840901.281906.132505.16460HepG2RBM25
CCT6P1ENSG00000228409.1137.5991074.969900.876003.047902.33980HepG2SF3A3
CCT6P1ENSG00000228409.195.9240056.491600.763802.153901.64770HepG2TAF15
CCT6P1ENSG00000228409.195.6692051.902600.882102.896602.04330HepG2TIA1
CCT6P1ENSG00000228409.1125.8605070.656200.832802.823801.71360HepG2XPO5
CCT6P1ENSG00000228409.1564.15270186.143901.5996020.9494019.50820K562AQR
CCT6P1ENSG00000228409.1168.57170105.543700.675402.821001.99200K562EIF4A3
CCT6P1ENSG00000228409.1218.38830135.308900.690503.569702.60650K562RBM22
CCT6P1ENSG00000228409.1161.7240086.105000.909302.638001.44960K562SNRNP200
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CCT6P1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of CCT6P1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for CCT6P1 is not avaliable on ENCORE database.