AP003041.2

General Information

Gene Name       : AP003041.2
Gene ID             : ENSG00000255535.2
Essential Gene : No

Functions

Localization

Domains (AlphaFold: AP003041.2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878AP003041.2ENSG00000255535.20.000.000.00ENCSR000AEF
HepG2AP003041.2ENSG00000255535.20.000.000.00ENCSR985KAT
K562AP003041.2ENSG00000255535.20.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for AP003041.2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • AP003041.2 RNA is bound by 17 proteins.  







eCLIP assay for AP003041.2 is not avaliable on ENCORE database.





17 proteins are bound to AP003041.2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr11129940827129940919+intron-Distal4.270298.80803HepG2CSTF2T
chr11129939788129939975+5'-UTR,CDS,intron-Distal,intron-Proximal3.011076.10629K562PUM1
chr11129939917129939976+5'-UTR,CDS,intron-Distal,intron-Proximal3.9506419.80546HepG2ZNF800
chr11129941813129941861+intron-Distal5.188688.23608HepG2HNRNPM
chr11129940831129940924+intron-Distal4.836995.23961K562GTF2F1
chr11129940834129940910+intron-Distal3.426894.85646HepG2HNRNPM
chr11129939913129939966+5'-UTR,CDS,intron-Distal,intron-Proximal4.3821133.92285HepG2RPS3
chr11129942290129942339+intron-Distal3.169613.39857HepG2HNRNPM
chr11129939875129939956+5'-UTR,CDS,intron-Distal,intron-Proximal3.021063.53928K562ZNF800
chr11129940080129940137+intron-Distal3.201333.61733HepG2XPO5
chr11129940830129940909+intron-Distal4.282938.01571HepG2GTF2F1
chr11129939794129939952+5'-UTR,CDS,intron-Distal,intron-Proximal3.2789916.37606K562RPS3
chr11129939851129939976+5'-UTR,CDS,intron-Distal,intron-Proximal3.0920412.41998K562UCHL5
chr11129940823129940892+intron-Distal3.117524.17963HepG2FAM120A
chr11129939915129939975+5'-UTR,CDS,intron-Distal,intron-Proximal3.6193845.06662HepG2GRWD1
chr11129940837129940925+intron-Distal3.560006.67944HepG2NKRF
chr11129939882129939915+5'-UTR,CDS,intron-Distal,intron-Proximal3.3482823.13442HepG2GRWD1
chr11129940820129940881+intron-Distal3.801418.37089HepG2PRPF4
chr11129939794129939913+5'-UTR,CDS,intron-Distal,intron-Proximal4.2633272.65847HepG2RPS3
chr11129939796129939884+5'-UTR,CDS,intron-Distal4.59887400.00000HepG2DDX3X
chr11129940131129940180+intron-Distal4.110263.98553K562NONO
chr11129939916129939971+5'-UTR,CDS,intron-Distal,intron-Proximal4.76921400.00000HepG2DDX3X
chr11129940824129940882+intron-Distal3.649203.21001HepG2XRN2
chr11129939971129939976+5'-UTR,CDS,intron-Distal,intron-Proximal3.0885610.49889HepG2BCLAF1
chr11129940653129940711+intron-Distal,intron-Proximal4.507025.12432K562EXOSC5
chr11129939884129939914+5'-UTR,CDS,intron-Distal,intron-Proximal4.27237400.00000HepG2DDX3X
chr11129940850129940911+intron-Distal4.214714.58989K562NONO
chr11129940840129940915+intron-Distal3.456204.25110K562CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for AP003041.2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for AP003041.2 is not available on ENCORE database.

  • No RBPs affect the gene expression of AP003041.2 on ENCORE database.


The Knockdown/knockout RNA-Seq assay for AP003041.2 is not available on ENCORE database.






No RBPs affect the gene expression of AP003041.2 on ENCORE database.






The Knockdown/knockout RNA-Seq assay for AP003041.2 is not available on ENCORE database.






No RBPs affect the alternative splcing events of AP003041.2 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for AP003041.2 is not avaliable on ENCORE database.