AC002116.7

General Information

Gene Name       : AC002116.7
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: AC002116.7)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for AC002116.7 is not avaliable on ENCORE database.



Proteins bound to RNA
  • AC002116.7 RNA is bound by 10 proteins.  







eCLIP assay for AC002116.7 is not avaliable on ENCORE database.





10 proteins are bound to AC002116.7 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr193652144636521627+intron-Distal4.627834.76505K562HNRNPK
chr193653299136533067+intron-Distal4.506293.48173K562GTF2F1
chr193651780936517888+intron-Distal3.748705.40390K562EWSR1
chr193652945736529520+intron-Distal3.056995.26256K562ILF3
chr193651962136519791+intron-Distal3.560683.98966K562HNRNPK
chr193652855636528587+intron-Distal5.027346.56347K562AGGF1
chr193651701136517084+intron-Distal4.294389.80960K562NONO
chr193652386036523949+intron-Distal3.317783.84725K562NONO
chr193651700036517074+intron-Distal3.405205.03137K562GTF2F1
chr193652247536522575+intron-Distal3.232123.86715K562HNRNPK
chr193652820436528397+intron-Distal4.6116317.56859K562HNRNPL
chr193651699236517079+intron-Distal3.033903.13858K562DROSHA
chr193653058836530666+intron-Distal3.723703.07008K562NONO
chr193651811136518152+intron-Distal3.723703.07008K562NONO
chr193652689136526983+intron-Distal4.210123.19125K562GTF2F1
chr193651782136517889+intron-Distal3.274627.83137K562NONO
chr193652274336522813+intron-Distal4.069963.57432K562NONO
chr193652386036523958+intron-Distal4.381305.40707K562CSTF2T
chr193652803636528114+intron-Distal3.370484.48570K562HNRNPL
chr193652054936520621+intron-Distal4.833595.81225K562PTBP1
chr193652818736528256+intron-Distal4.1488212.83795K562AGGF1
chr193652631636526412+intron-Distal4.438445.42636K562NONO
chr193651756836517617+intron-Distal3.189403.84859K562NONO
chr193652310736523236+intron-Distal4.550494.75718K562EWSR1
chr193652825636528406+intron-Distal5.9607539.98496K562AGGF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for AC002116.7 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for AC002116.7 is not available on ENCORE database.

  • 5 RBPs can affect the levels of AC002116.7.  








The Knockdown/knockout RNA-Seq assay for AC002116.7 is not available on ENCORE database.





5 RBPs can affect the gene expression of AC002116.7 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
AC002116.7ENSG00000267698.12.1277015.97110-2.908102.489601.99120HepG2RBM22
AC002116.7ENSG00000267698.14.1692018.03890-2.113302.111001.65470HepG2SRFBP1
AC002116.7ENSG00000267698.115.1273037.60490-1.313801.804301.31030K562AQR
AC002116.7ENSG00000267698.121.1966046.72970-1.140502.123201.34280K562MBNL1
AC002116.7ENSG00000267698.116.5349042.37170-1.357602.691801.84250K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for AC002116.7 is not available on ENCORE database.






No RBPs affect the alternative splcing events of AC002116.7 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for AC002116.7 is not avaliable on ENCORE database.