GOLGB1

General Information

Gene Name : GOLGB1
Gene ID : ENSG00000173230.15
Essential Gene : No

Functions

Novel RBP

Localization(RBPImage: GOLGB1)

Cytoplasm
Compartment/Organelle
Golgi

Domains (AlphaFold: GOLGB1)

No checked domain (RRM, ZNF, KH, Helicase, Nuclease, dRBM or PUM_HD)

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	GOLGB1	ENSG00000173230.15	17.12	17.88	17.50	ENCSR000AEF
HepG2	GOLGB1	ENSG00000173230.15	12.49	20.13	16.31	ENCSR985KAT
K562	GOLGB1	ENSG00000173230.15	5.85	6.53	6.19	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
GOLGB1	HepG2	shRNA			BGHLV31-37,BGHLV31-38	BGHLV31-1,BGHLV31-2		NotSatisfied	ENCODE3

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

GOLGB1: Click to RBP Image Database

Cytoplasm

Compartment/Organelle

Golgi

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for GOLGB1 is not avaliable on ENCORE database.

Proteins bound to RNA

GOLGB1 RNA is bound by 26 proteins.

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eCLIP assay for GOLGB1 is not avaliable on ENCORE database.

26 proteins are bound to GOLGB1 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	121413502	121413590	-	3'-UTR,CDS,intron-Distal	5.47538	25.65894	HepG2	BCLAF1
chr3	121409931	121410003	-	3'-UTR,CDS,intron-Distal	6.77772	25.45013	HepG2	BCLAF1
chr3	121410009	121410084	-	3'-UTR,CDS,intron-Distal	5.27020	25.07496	HepG2	BCLAF1
chr3	121416077	121416162	-	3'-UTR,CDS,intron-Distal	6.03464	24.83941	HepG2	BCLAF1
chr3	121413653	121413736	-	3'-UTR,CDS,intron-Distal	5.23223	23.95404	HepG2	BCLAF1
chr3	121437948	121438003	-	intron-Distal	5.49761	22.72580	HepG2	QKI
chr3	121412597	121412653	-	3'-UTR,CDS,intron-Distal	5.78245	21.59876	HepG2	BCLAF1
chr3	121413867	121413931	-	3'-UTR,CDS,intron-Distal	4.35495	21.58160	HepG2	BCLAF1
chr3	121413144	121413215	-	3'-UTR,CDS,intron-Distal	4.70599	20.88881	HepG2	BCLAF1
chr3	121435773	121435864	-	5'-UTR,CDS,intron-Distal	4.06788	20.16822	HepG2	BCLAF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 161 entries

eCLIP assay for GOLGB1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for GOLGB1 is not available on ENCORE database.
106 RBPs can affect the levels of GOLGB1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for GOLGB1 is not available on ENCORE database.

106 RBPs can affect the gene expression of GOLGB1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
GOLGB1	ENSG00000173230.11	6670.53560	3558.95810	0.90620	50.84660	49.38120	HepG2	SRSF1
GOLGB1	ENSG00000173230.11	1214.07020	2626.82750	-1.11350	45.57340	43.31470	K562	AGGF1
GOLGB1	ENSG00000173230.11	3000.38840	5492.56780	-0.87230	43.27110	41.31660	HepG2	UTP3
GOLGB1	ENSG00000173230.11	1848.12720	4980.27950	-1.43020	27.94070	24.69350	HepG2	SRSF3
GOLGB1	ENSG00000173230.11	1432.28950	2641.18540	-0.88290	24.00240	22.18250	K562	RBM15
GOLGB1	ENSG00000173230.11	1292.32430	2710.76470	-1.06870	22.54020	21.01370	K562	PUS1
GOLGB1	ENSG00000173230.11	5205.25250	3409.58100	0.61030	20.56540	19.19870	HepG2	SF3B4
GOLGB1	ENSG00000173230.11	5676.52780	3958.84130	0.51980	20.27770	18.84150	HepG2	CKAP4
GOLGB1	ENSG00000173230.11	1353.66250	2476.10250	-0.87120	19.57740	17.88360	K562	PTBP1
GOLGB1	ENSG00000173230.11	4858.75760	3218.53560	0.59410	19.22660	17.86110	HepG2	PCBP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 126 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for GOLGB1 is not available on ENCORE database.

10 RBPs can affect the splicing of GOLGB1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	GOLGB1	ENSG00000173230.11	chr3	-	121401763	121401893			121400533	121400712	121409516	121411428	0.17300	0.00000	0.00000	included	K562	AQR
SE	GOLGB1	ENSG00000173230.11	chr3	-	121387160	121387355			121386907	121387005	121388058	121388202	0.31300	0.00000	0.00064	included	HepG2	FTO
SE	GOLGB1	ENSG00000173230.11	chr3	-	121387160	121387355			121386907	121387005	121388058	121388202	0.35600	0.00000	0.00005	included	HepG2	HNRNPC
MXE	GOLGB1	ENSG00000173230.11	chr3	-	121401763	121401810	121409516	121411428	121400533	121400712	121421327	121421442	-0.25100	0.00000	0.00003	2included	K562	AQR
SE	GOLGB1	ENSG00000173230.11	chr3	-	121438492	121438615			121437234	121437348	121441108	121441225	-0.50300	0.00001	0.00049	excluded	HepG2	SF3A3
SE	GOLGB1	ENSG00000173230.11	chr3	-	121401763	121401810			121400533	121400712	121409516	121411428	0.11700	0.00003	0.00165	included	HepG2	SF3A3
SE	GOLGB1	ENSG00000173230.11	chr3	-	121401763	121401810			121400533	121400712	121409516	121411428	0.08300	0.00009	0.00621	included	HepG2	MATR3
SE	GOLGB1	ENSG00000173230.11	chr3	-	121438492	121438615			121437234	121437348	121441108	121441225	0.49500	0.00017	0.01080	included	HepG2	MATR3
SE	GOLGB1	ENSG00000173230.11	chr3	-	121387160	121387355			121386907	121387005	121388058	121388202	0.14800	0.00019	0.04546	included	HepG2	XRCC6
SE	GOLGB1	ENSG00000173230.11	chr3	-	121387160	121387355			121386907	121387005	121388058	121388202	0.52000	0.00048	0.01038	included	K562	HNRNPC

Showing 1 to 10 of 16 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

GOLGB1

General Information

Functions

Localization(RBPImage: GOLGB1)

Domains (AlphaFold: GOLGB1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for GOLGB1 is not avaliable on ENCORE database.

26 proteins are bound to GOLGB1 RNA:

eCLIP assay for GOLGB1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for GOLGB1 is not available on ENCORE database.

106 RBPs can affect the gene expression of GOLGB1 :

The Knockdown/knockout RNA-Seq assay for GOLGB1 is not available on ENCORE database.

10 RBPs can affect the splicing of GOLGB1 :

The Knockdown/knockout RNA-Seq assay for GOLGB1 is not avaliable on ENCORE database.