TBX3

General Information

Gene Name : TBX3
Gene ID : ENSG00000135111.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TBX3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TBX3	ENSG00000135111.15	0.00	0.00	0.00	ENCSR000AEF
HepG2	TBX3	ENSG00000135111.15	25.54	38.46	32.00	ENCSR985KAT
K562	TBX3	ENSG00000135111.15	0.25	0.28	0.27	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TBX3 is not avaliable on ENCORE database.

Proteins bound to RNA

TBX3 RNA is bound by 18 proteins.

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eCLIP assay for TBX3 is not avaliable on ENCORE database.

18 proteins are bound to TBX3 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	115117401	115117482	-	CDS,intron-Distal,intron-Proximal	3.32501	11.87851	HepG2	U2AF2
chr12	115109004	115109070	-	3'-UTR,intron-Distal	4.90676	10.81031	HepG2	FUBP3
chr12	115108557	115108649	-	3'-UTR,intron-Distal	4.25233	10.77990	HepG2	FUBP3
chr12	115118569	115118653	-	intron-Distal,intron-Proximal	3.20598	10.09988	HepG2	RBM22
chr12	115121538	115121585	-	5'-UTR,intron-Distal	4.19171	9.09685	HepG2	RBM15
chr12	115110046	115110165	-	CDS,intron-Distal	4.52843	8.99007	HepG2	AQR
chr12	115115380	115115458	-	CDS,intron-Distal,intron-Proximal	4.48217	8.85766	HepG2	BCLAF1
chr12	115114100	115114188	-	CDS,intron-Distal,intron-Proximal	3.83655	8.28719	HepG2	BUD13
chr12	115117298	115117388	-	CDS,intron-Distal,intron-Proximal	3.82052	8.25092	HepG2	BCLAF1
chr12	115114253	115114322	-	CDS,intron-Distal,intron-Proximal	3.30951	7.99874	HepG2	BUD13
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 34 entries

eCLIP assay for TBX3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TBX3 is not available on ENCORE database.
92 RBPs can affect the levels of TBX3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TBX3 is not available on ENCORE database.

92 RBPs can affect the gene expression of TBX3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TBX3	ENSG00000135111.10	2605.05010	1472.13820	0.82330	27.33180	25.95840	HepG2	PTBP1
TBX3	ENSG00000135111.10	1112.93720	2399.78750	-1.10850	27.00290	25.40060	HepG2	PUF60
TBX3	ENSG00000135111.10	2180.36170	1301.48360	0.74430	23.33720	22.02470	HepG2	SRSF9
TBX3	ENSG00000135111.10	2836.15360	1522.39070	0.89750	20.18440	18.76060	HepG2	RPS19
TBX3	ENSG00000135111.10	2895.00580	1879.59250	0.62300	16.81750	15.04750	HepG2	PARN
TBX3	ENSG00000135111.10	5053.27230	3158.34580	0.67790	15.72710	13.95630	HepG2	RBM15
TBX3	ENSG00000135111.10	5060.67620	2662.28730	0.92660	14.47070	12.93800	HepG2	FIP1L1
TBX3	ENSG00000135111.10	2925.30090	2066.23810	0.50150	13.18760	12.06620	HepG2	ACO1
TBX3	ENSG00000135111.10	1334.67220	1976.87310	-0.56670	11.89440	10.69300	HepG2	DKC1
TBX3	ENSG00000135111.10	2657.66580	1442.42580	0.88160	11.46700	10.31080	HepG2	DDX6
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 93 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TBX3 is not available on ENCORE database.

19 RBPs can affect the splicing of TBX3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	TBX3	ENSG00000135111.10	chr12	-	115117717	115117777	115117309	115117456	115118683	115118951	0.28200	0.00000	included	HepG2	G3BP1
SE	TBX3	ENSG00000135111.10	chr12	-	115117717	115117777	115117309	115117456	115118683	115118951	0.27800	0.00001	included	HepG2	HNRNPK
SE	TBX3	ENSG00000135111.10	chr12	-	115117717	115117777	115117309	115117456	115118683	115118951	-0.47000	0.00000	excluded	HepG2	U2AF2
SE	TBX3	ENSG00000135111.10	chr12	-	115117717	115117777	115117309	115117456	115118683	115118951	0.32700	0.00008	included	HepG2	UCHL5
SE	TBX3	ENSG00000135111.10	chr12	-	115117717	115117777	115117309	115117456	115118683	115118951	0.29600	0.00000	included	HepG2	MATR3
SE	TBX3	ENSG00000135111.10	chr12	-	115117717	115117777	115117309	115117456	115118683	115118951	0.25300	0.00000	included	HepG2	DDX6
SE	TBX3	ENSG00000135111.10	chr12	-	115117717	115117777	115117309	115117456	115118683	115118951	0.16900	0.00021	included	HepG2	RBM15
SE	TBX3	ENSG00000135111.10	chr12	-	115117717	115117777	115117309	115117456	115118683	115118951	-0.25200	0.00128	excluded	HepG2	HNRNPUL1
SE	TBX3	ENSG00000135111.10	chr12	-	115117717	115117777	115117309	115117456	115118683	115118951	0.39900	0.00000	included	HepG2	SRSF1
SE	TBX3	ENSG00000135111.10	chr12	-	115117717	115117777	115117309	115117456	115118683	115118951	0.23000	0.00045	included	HepG2	IGF2BP3

Showing 1 to 10 of 19 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TBX3

General Information

Functions

Localization

Domains (AlphaFold: TBX3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TBX3 is not avaliable on ENCORE database.

18 proteins are bound to TBX3 RNA:

eCLIP assay for TBX3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TBX3 is not available on ENCORE database.

92 RBPs can affect the gene expression of TBX3 :

The Knockdown/knockout RNA-Seq assay for TBX3 is not available on ENCORE database.

19 RBPs can affect the splicing of TBX3 :

The Knockdown/knockout RNA-Seq assay for TBX3 is not avaliable on ENCORE database.