TBCB

General Information

Gene Name : TBCB
Gene ID : ENSG00000105254.11
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TBCB)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TBCB	ENSG00000105254.11	31.55	56.83	44.19	ENCSR000AEF
HepG2	TBCB	ENSG00000105254.11	270.56	157.27	213.92	ENCSR985KAT
K562	TBCB	ENSG00000105254.11	48.04	38.85	43.45	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TBCB is not avaliable on ENCORE database.

Proteins bound to RNA

TBCB RNA is bound by 15 proteins.

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eCLIP assay for TBCB is not avaliable on ENCORE database.

15 proteins are bound to TBCB RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	36616680	36616766	+	3'-UTR,CDS	3.86472	11.49033	HepG2	LARP4
chr19	36612009	36612113	+	intron-Distal	4.62932	10.92835	HepG2	PRPF8
chr19	36616571	36616675	+	3'-UTR,CDS	3.06813	9.08837	HepG2	LARP4
chr19	36612428	36612590	+	CDS,intron-Distal,intron-Proximal	3.75432	7.11719	HepG2	RPS3
chr19	36612543	36612626	+	CDS,intron-Distal,intron-Proximal	3.78610	6.98305	HepG2	PPIG
chr19	36606397	36606564	+	5'-UTR,CDS	3.66798	6.96255	HepG2	DDX3X
chr19	36611959	36612092	+	intron-Distal	4.19805	6.94246	HepG2	FAM120A
chr19	36612250	36612308	+	intron-Distal	5.35663	6.82887	HepG2	EFTUD2
chr19	36612127	36612209	+	intron-Distal	5.21989	6.62861	HepG2	FAM120A
chr19	36612063	36612139	+	intron-Distal	4.75516	6.57216	HepG2	PRPF4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 26 entries

eCLIP assay for TBCB is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TBCB is not available on ENCORE database.
69 RBPs can affect the levels of TBCB.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TBCB is not available on ENCORE database.

69 RBPs can affect the gene expression of TBCB :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TBCB	ENSG00000105254.7	557.29950	1134.48750	-1.02550	26.62080	25.23920	HepG2	SRSF9
TBCB	ENSG00000105254.7	733.54680	1253.44140	-0.77290	14.07970	12.95980	HepG2	TAF15
TBCB	ENSG00000105254.7	980.82840	1510.13560	-0.62260	13.45670	12.49600	HepG2	SSB
TBCB	ENSG00000105254.7	634.77440	347.24420	0.87020	12.65260	11.36660	K562	DDX47
TBCB	ENSG00000105254.7	1786.45160	1261.08460	0.50230	9.45070	8.43760	HepG2	PCBP1
TBCB	ENSG00000105254.7	1227.20690	870.82340	0.49480	7.65880	6.74320	HepG2	UTP3
TBCB	ENSG00000105254.7	441.12460	688.98780	-0.64330	7.92590	6.70400	HepG2	PRPF4
TBCB	ENSG00000105254.7	2168.56070	1387.64700	0.64400	6.81950	5.84560	HepG2	NCBP2
TBCB	ENSG00000105254.7	2267.18570	1463.38960	0.63150	6.66870	5.74020	HepG2	DDX3X
TBCB	ENSG00000105254.7	136.97980	283.06990	-1.04720	6.83330	5.52530	K562	PCBP3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 70 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TBCB is not available on ENCORE database.

10 RBPs can affect the splicing of TBCB :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	TBCB	ENSG00000105254.7	chr19	+	36612978	36613075	36612428	36612620	36616352	36616425	0.09500	0.00000	0.00082	included	HepG2	FUBP3
SE	TBCB	ENSG00000105254.7	chr19	+	36612978	36613075	36612428	36612620	36616352	36616425	0.07300	0.00001	0.00125	included	HepG2	PCBP1
SE	TBCB	ENSG00000105254.7	chr19	+	36612978	36613075	36612428	36612620	36616352	36616425	0.08100	0.00002	0.00728	included	HepG2	TIA1
RI	TBCB	ENSG00000105254.7	chr19	+	36611383	36611708	36611383	36611417	36611611	36611708	0.13800	0.00031	0.00342	included	HepG2	U2AF2
SE	TBCB	ENSG00000105254.7	chr19	+	36612978	36613075	36612428	36612620	36616352	36616425	0.05400	0.00088	0.06787	included	HepG2	DDX6
RI	TBCB	ENSG00000105254.7	chr19	+	36611383	36611708	36611383	36611417	36611611	36611708	0.12100	0.00231	0.01866	included	HepG2	SF3B4
RI	TBCB	ENSG00000105254.7	chr19	+	36611383	36611708	36611383	36611417	36611611	36611708	-0.11600	0.00260	0.09017	excluded	HepG2	LARP4
SE	TBCB	ENSG00000105254.7	chr19	+	36612978	36613075	36612428	36612620	36616352	36616425	0.06900	0.00263	0.02749	included	K562	AQR
RI	TBCB	ENSG00000105254.7	chr19	+	36611383	36611708	36611383	36611417	36611611	36611708	0.11400	0.00265	0.03010	included	HepG2	SF3A3
RI	TBCB	ENSG00000105254.7	chr19	+	36611383	36611708	36611383	36611417	36611611	36611708	0.11100	0.00553	0.05480	included	HepG2	NCBP2

Showing 1 to 10 of 10 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TBCB

General Information

Functions

Localization

Domains (AlphaFold: TBCB)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TBCB is not avaliable on ENCORE database.

15 proteins are bound to TBCB RNA:

eCLIP assay for TBCB is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TBCB is not available on ENCORE database.

69 RBPs can affect the gene expression of TBCB :

The Knockdown/knockout RNA-Seq assay for TBCB is not available on ENCORE database.

10 RBPs can affect the splicing of TBCB :

The Knockdown/knockout RNA-Seq assay for TBCB is not avaliable on ENCORE database.