TATDN1

General Information

Gene Name : TATDN1
Gene ID : ENSG00000147687.18
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TATDN1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TATDN1	ENSG00000147687.18	48.77	36.54	42.66	ENCSR000AEF
HepG2	TATDN1	ENSG00000147687.18	14.32	31.31	22.81	ENCSR985KAT
K562	TATDN1	ENSG00000147687.18	47.62	45.52	46.57	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TATDN1 is not avaliable on ENCORE database.

Proteins bound to RNA

TATDN1 RNA is bound by 10 proteins.

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eCLIP assay for TATDN1 is not avaliable on ENCORE database.

10 proteins are bound to TATDN1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr8	125551226	125551319	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.80767	10.09745	HepG2	PRPF8
chr8	125500761	125500792	-	3'-UTR,intron-Distal,intron-Proximal	4.63246	9.84602	K562	PABPC4
chr8	125535175	125535244	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.88195	7.89340	K562	DDX3X
chr8	125515396	125515500	-	intron-Distal	4.86355	7.17216	HepG2	QKI
chr8	125551259	125551313	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.77988	7.12859	K562	DDX3X
chr8	125544275	125544356	-	intron-Distal	4.15748	6.53456	HepG2	PCBP2
chr8	125551204	125551275	-	5'-UTR,CDS,intron-Distal	3.65153	5.03897	K562	PRPF8
chr8	125547847	125547932	-	intron-Distal	4.36396	4.89163	HepG2	HNRNPL
chr8	125513486	125513549	-	intron-Distal	4.05803	3.86809	HepG2	SUGP2
chr8	125513360	125513435	-	intron-Distal	3.27002	3.69184	HepG2	SUGP2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 15 entries

eCLIP assay for TATDN1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TATDN1 is not available on ENCORE database.
65 RBPs can affect the levels of TATDN1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TATDN1 is not available on ENCORE database.

65 RBPs can affect the gene expression of TATDN1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TATDN1	ENSG00000147687.12	247.80380	497.82040	-1.00640	12.12720	11.28690	HepG2	SRSF1
TATDN1	ENSG00000147687.12	221.24980	479.78740	-1.11670	10.08610	8.92110	HepG2	NCBP2
TATDN1	ENSG00000147687.12	1101.11220	598.98800	0.87830	9.88380	7.89310	K562	HNRNPM
TATDN1	ENSG00000147687.12	363.77510	691.80090	-0.92730	8.53280	7.29570	K562	SRSF1
TATDN1	ENSG00000147687.12	1036.04120	676.00190	0.61590	8.17360	6.77770	K562	U2AF2
TATDN1	ENSG00000147687.12	306.96930	509.82770	-0.73190	7.16830	6.36750	HepG2	NELFE
TATDN1	ENSG00000147687.12	279.70830	458.12670	-0.71180	6.75840	5.97760	HepG2	PTBP1
TATDN1	ENSG00000147687.12	1769.82510	987.51000	0.84160	7.11870	5.85370	K562	HSPD1
TATDN1	ENSG00000147687.12	224.73740	417.92700	-0.89500	6.63180	5.73730	HepG2	EIF2S1
TATDN1	ENSG00000147687.12	282.54870	506.08750	-0.84090	6.60400	5.67930	HepG2	DDX3X
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 74 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TATDN1 is not available on ENCORE database.

15 RBPs can affect the splicing of TATDN1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	TATDN1	ENSG00000147687.12	chr8	-	125534391	125534441			125530982	125531122	125535177	125535243	-0.23200	0.00000	0.00000	excluded	K562	SRSF1
SE	TATDN1	ENSG00000147687.12	chr8	-	125527986	125528029			125520847	125520929	125551265	125551699	-0.19900	0.00000	0.00001	excluded	K562	SF3B4
SE	TATDN1	ENSG00000147687.12	chr8	-	125527986	125528029			125520843	125520929	125551265	125551699	-0.09900	0.00000	0.00001	excluded	K562	AQR
A5SS	TATDN1	ENSG00000147687.12	chr8	-	125551168	125551319			125551265	125551319	125535177	125535243	0.11900	0.00000	0.00104	longer	K562	HNRNPL
SE	TATDN1	ENSG00000147687.12	chr8	-	125534391	125534441			125530982	125531122	125535177	125535243	0.18500	0.00001	0.00252	included	HepG2	HNRNPA1
MXE	TATDN1	ENSG00000147687.12	chr8	-	125527986	125528029	125528127	125528271	125520843	125520929	125531058	125531122	-0.08500	0.00001	0.00407	2included	K562	LARP4
A5SS	TATDN1	ENSG00000147687.12	chr8	-	125551168	125551329			125551265	125551329	125535177	125535243	-0.11000	0.00004	0.00390	shorter	K562	SRSF1
SE	TATDN1	ENSG00000147687.12	chr8	-	125516080	125516192			125507712	125507783	125516511	125516588	0.16700	0.00009	0.01037	included	K562	HNRNPL
SE	TATDN1	ENSG00000147687.12	chr8	-	125534391	125534441			125530982	125531122	125535177	125535243	0.15000	0.00010	0.00694	included	HepG2	HNRNPU
MXE	TATDN1	ENSG00000147687.12	chr8	-	125528127	125528271	125531058	125531122	125527986	125528029	125535177	125535243	0.25300	0.00010	0.00292	1included	K562	SRSF1

Showing 1 to 10 of 21 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TATDN1

General Information

Functions

Localization

Domains (AlphaFold: TATDN1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TATDN1 is not avaliable on ENCORE database.

10 proteins are bound to TATDN1 RNA:

eCLIP assay for TATDN1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TATDN1 is not available on ENCORE database.

65 RBPs can affect the gene expression of TATDN1 :

The Knockdown/knockout RNA-Seq assay for TATDN1 is not available on ENCORE database.

15 RBPs can affect the splicing of TATDN1 :

The Knockdown/knockout RNA-Seq assay for TATDN1 is not avaliable on ENCORE database.