RNF31

General Information

Gene Name : RNF31
Gene ID : ENSG00000092098.16
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RNF31)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RNF31	ENSG00000092098.16	18.83	32.06	25.45	ENCSR000AEF
HepG2	RNF31	ENSG00000092098.16	119.41	72.45	95.93	ENCSR985KAT
K562	RNF31	ENSG00000092098.16	27.36	16.37	21.87	ENCSR000AEO

Assays

1 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
knockdown followed by RNA-seq	RNF31-BGRSLV07-RS293		RNF31	Ribo-STAMP-293T	Released			shRNA	KD% = ,

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
RNF31	Ribo-STAMP-293T	shRNA			BGRSLV05-11,BGRSLV05-12	BGRSLV05-1,BGRSLV05-2		NotSatisfied	ENCORE2
RNF31	Ribo-STAMP-293T	shRNA			RNF31-BGRSLV07-21,RNF31-BGRSLV07-22	NT-BGRSLV07-1,NT-BGRSLV07-2	,	Released	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RNF31 is not avaliable on ENCORE database.

Proteins bound to RNA

RNF31 RNA is bound by 27 proteins.

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eCLIP assay for RNF31 is not avaliable on ENCORE database.

27 proteins are bound to RNF31 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr14	24627375	24627470	+	3'-UTR,CDS,intron-Proximal	5.58164	32.74187	HepG2	PRPF8
chr14	24620540	24620589	+	CDS,intron-Distal,intron-Proximal	5.04871	26.80919	HepG2	PPIG
chr14	24617296	24617332	+	5'-UTR,CDS,intron-Distal,intron-Proximal	5.67889	24.78808	HepG2	PPIG
chr14	24620110	24620166	+	intron-Distal,intron-Proximal	3.72169	23.48513	HepG2	PRPF8
chr14	24620692	24620748	+	CDS,intron-Distal,intron-Proximal	4.62041	22.51146	HepG2	PPIG
chr14	24617328	24617404	+	5'-UTR,CDS,intron-Distal,intron-Proximal	5.44234	20.73035	HepG2	AQR
chr14	24620678	24620799	+	CDS,intron-Distal,intron-Proximal	3.63671	19.39246	HepG2	BUD13
chr14	24626847	24626895	+	intron-Proximal	4.39010	17.48691	HepG2	PRPF8
chr14	24620338	24620375	+	CDS,intron-Distal,intron-Proximal	3.67779	17.12315	HepG2	PPIG
chr14	24624289	24624363	+	5'-UTR,intron-Proximal	4.96918	16.91373	HepG2	SF3B4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 111 entries

eCLIP assay for RNF31 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RNF31 is not available on ENCORE database.
72 RBPs can affect the levels of RNF31.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RNF31 is not available on ENCORE database.

72 RBPs can affect the gene expression of RNF31 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RNF31	ENSG00000092098.12	2878.57040	1763.24410	0.70700	25.47420	23.89890	HepG2	SUCLG1
RNF31	ENSG00000092098.12	2441.45600	1666.91960	0.55050	17.04050	15.82760	HepG2	PUM1
RNF31	ENSG00000092098.12	1585.41390	2358.09560	-0.57280	15.20820	14.28250	HepG2	SRFBP1
RNF31	ENSG00000092098.12	2337.33320	1550.42530	0.59210	14.52620	13.25240	HepG2	SRSF5
RNF31	ENSG00000092098.12	2268.04480	1535.84040	0.56230	12.38190	11.27300	HepG2	SF3B4
RNF31	ENSG00000092098.12	27.24500	128.61980	-2.23900	11.71140	10.05550	K562	G3BP2
RNF31	ENSG00000092098.12	2253.38950	1603.07670	0.49120	10.44090	9.65270	HepG2	SRSF1
RNF31	ENSG00000092098.12	2098.63250	1475.14890	0.50850	10.29480	9.37010	HepG2	PTBP1
RNF31	ENSG00000092098.12	295.48860	133.79100	1.14300	10.69250	8.95730	K562	SF3B4
RNF31	ENSG00000092098.12	3521.10180	1875.86050	0.90840	10.11650	8.76410	HepG2	SF3A3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 80 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RNF31 is not available on ENCORE database.

9 RBPs can affect the splicing of RNF31 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A5SS	RNF31	ENSG00000092098.12	chr14	+	24617466	24617686	24617466	24617622	24617850	24617910	0.28900	0.00000	0.00010	longer	K562	EFTUD2
A5SS	RNF31	ENSG00000092098.12	chr14	+	24617466	24617686	24617466	24617622	24617850	24617910	0.07900	0.00001	0.00212	longer	HepG2	SF3A3
A5SS	RNF31	ENSG00000092098.12	chr14	+	24617466	24617686	24617466	24617622	24617850	24617910	0.29200	0.00003	0.00545	longer	K562	PRPF8
A5SS	RNF31	ENSG00000092098.12	chr14	+	24617466	24617686	24617466	24617622	24617850	24617910	-0.11300	0.00004	0.01466	shorter	HepG2	SUPV3L1
A5SS	RNF31	ENSG00000092098.12	chr14	+	24617466	24617686	24617466	24617622	24617850	24617910	-0.09600	0.00005	0.03490	shorter	HepG2	DDX55
A5SS	RNF31	ENSG00000092098.12	chr14	+	24617466	24617686	24617466	24617622	24617850	24617910	0.11600	0.00012	0.03265	longer	HepG2	PCBP2
RI	RNF31	ENSG00000092098.12	chr14	+	24626728	24627117	24626728	24626847	24627040	24627117	-0.48900	0.00026	0.00376	excluded	HepG2	U2AF1
A5SS	RNF31	ENSG00000092098.12	chr14	+	24617466	24617686	24617466	24617622	24617850	24617910	0.09500	0.00034	0.04866	longer	HepG2	MATR3
A5SS	RNF31	ENSG00000092098.12	chr14	+	24617466	24617686	24617466	24617622	24617850	24617910	0.13100	0.00359	0.05487	longer	K562	AQR
RI	RNF31	ENSG00000092098.12	chr14	+	24624168	24624539	24624168	24624241	24624365	24624539	0.13900	0.00388	0.03710	included	HepG2	U2AF1

Showing 1 to 10 of 10 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RNF31

General Information

Functions

Localization

Domains (AlphaFold: RNF31)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RNF31 is not avaliable on ENCORE database.

27 proteins are bound to RNF31 RNA:

eCLIP assay for RNF31 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RNF31 is not available on ENCORE database.

72 RBPs can affect the gene expression of RNF31 :

The Knockdown/knockout RNA-Seq assay for RNF31 is not available on ENCORE database.

9 RBPs can affect the splicing of RNF31 :

The Knockdown/knockout RNA-Seq assay for RNF31 is not avaliable on ENCORE database.