RNF146

General Information

Gene Name : RNF146
Gene ID : ENSG00000118518.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RNF146)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RNF146	ENSG00000118518.15	15.78	12.28	14.03	ENCSR000AEF
HepG2	RNF146	ENSG00000118518.15	14.32	19.26	16.79	ENCSR985KAT
K562	RNF146	ENSG00000118518.15	10.50	11.78	11.14	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RNF146 is not avaliable on ENCORE database.

Proteins bound to RNA

RNF146 RNA is bound by 10 proteins.

CanvasJS.com

eCLIP assay for RNF146 is not avaliable on ENCORE database.

10 proteins are bound to RNF146 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr6	127588017	127588158	+	5'-UTR,intron-Proximal	3.53188	9.84906	HepG2	NCBP2
chr6	127601490	127601634	+	intron-Distal,intron-Proximal	3.23727	7.02852	K562	KHSRP
chr6	127607177	127607221	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.41078	6.96989	HepG2	U2AF2
chr6	127606979	127607044	+	intron-Distal	3.81568	6.89441	K562	KHSRP
chr6	127606817	127606893	+	intron-Distal	3.69176	5.52268	HepG2	RBFOX2
chr6	127607887	127608114	+	3'-UTR,CDS	3.20428	5.18023	HepG2	GRWD1
chr6	127603386	127603513	+	3'-UTR,intron-Distal,intron-Proximal	3.11034	4.81700	HepG2	U2AF2
chr6	127588946	127588981	+	intron-Distal	4.20480	4.31871	HepG2	HNRNPM
chr6	127588069	127588177	+	5'-UTR,intron-Distal,intron-Proximal	3.80646	3.90326	K562	DDX6
chr6	127607280	127607355	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.23834	3.89565	K562	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 14 entries

eCLIP assay for RNF146 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RNF146 is not available on ENCORE database.
48 RBPs can affect the levels of RNF146.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RNF146 is not available on ENCORE database.

48 RBPs can affect the gene expression of RNF146 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RNF146	ENSG00000118518.11	1682.98310	891.04890	0.91730	18.76760	17.66360	HepG2	RBM22
RNF146	ENSG00000118518.11	533.46640	887.96780	-0.73510	13.45240	12.02350	HepG2	DAZAP1
RNF146	ENSG00000118518.11	934.34400	578.87040	0.69060	12.18980	11.05390	HepG2	PUS1
RNF146	ENSG00000118518.11	1623.42800	1066.09220	0.60660	11.67450	10.57940	HepG2	ETF1
RNF146	ENSG00000118518.11	921.15270	574.15370	0.68190	9.66210	8.71610	HepG2	TAF15
RNF146	ENSG00000118518.11	486.38150	840.52680	-0.78920	9.55490	8.53850	HepG2	PUF60
RNF146	ENSG00000118518.11	909.73390	587.78860	0.63000	9.12660	8.24860	HepG2	PTBP1
RNF146	ENSG00000118518.11	1236.65650	643.62740	0.94200	8.76300	7.57530	HepG2	EIF4B
RNF146	ENSG00000118518.11	379.16340	544.22620	-0.52140	5.15400	4.32330	HepG2	SAFB2
RNF146	ENSG00000118518.11	891.58140	654.14140	0.44670	4.83210	4.15250	HepG2	NELFE
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 53 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RNF146 is not available on ENCORE database.

20 RBPs can affect the splicing of RNF146 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RNF146	ENSG00000118518.11	chr6	+	127607194	127607322	127601375	127601485	127607760	127609507	0.68700	0.00000	0.00000	included	K562	SRSF1
SE	RNF146	ENSG00000118518.11	chr6	+	127607194	127607322	127601375	127601485	127607760	127608036	-0.43000	0.00000	0.00007	excluded	HepG2	SRSF7
SE	RNF146	ENSG00000118518.11	chr6	+	127607194	127607322	127601375	127601485	127607760	127608036	-0.38600	0.00000	0.00000	excluded	K562	PUS1
SE	RNF146	ENSG00000118518.11	chr6	+	127607194	127607322	127601375	127601485	127607760	127609507	0.52400	0.00000	0.00000	included	HepG2	SRSF1
SE	RNF146	ENSG00000118518.11	chr6	+	127607194	127607322	127601375	127601485	127607760	127609507	0.40300	0.00000	0.00051	included	HepG2	PCBP1
SE	RNF146	ENSG00000118518.11	chr6	+	127607194	127607322	127601375	127601485	127607760	127608036	-0.35000	0.00000	0.00006	excluded	K562	RBM15
SE	RNF146	ENSG00000118518.11	chr6	+	127607194	127607322	127601375	127601485	127607760	127608036	0.43800	0.00000	0.00216	included	K562	NCBP2
SE	RNF146	ENSG00000118518.11	chr6	+	127607194	127607322	127601375	127601485	127607760	127608036	-0.32200	0.00001	0.00084	excluded	K562	AKAP8L
SE	RNF146	ENSG00000118518.11	chr6	+	127607194	127607322	127601375	127601485	127607760	127608036	-0.34700	0.00001	0.00042	excluded	K562	AGGF1
SE	RNF146	ENSG00000118518.11	chr6	+	127607194	127607322	127601375	127601485	127607760	127609507	0.40500	0.00001	0.00119	included	HepG2	SRSF9

Showing 1 to 10 of 30 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RNF146

General Information

Functions

Localization

Domains (AlphaFold: RNF146)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RNF146 is not avaliable on ENCORE database.

10 proteins are bound to RNF146 RNA:

eCLIP assay for RNF146 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RNF146 is not available on ENCORE database.

48 RBPs can affect the gene expression of RNF146 :

The Knockdown/knockout RNA-Seq assay for RNF146 is not available on ENCORE database.

20 RBPs can affect the splicing of RNF146 :

The Knockdown/knockout RNA-Seq assay for RNF146 is not avaliable on ENCORE database.