GGNBP2

General Information

Gene Name : GGNBP2
Gene ID : ENSG00000278311.4
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: GGNBP2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	GGNBP2	ENSG00000278311.4	54.02	49.17	51.59	ENCSR000AEF
HepG2	GGNBP2	ENSG00000278311.4	37.79	53.09	45.44	ENCSR985KAT
K562	GGNBP2	ENSG00000278311.4	56.96	60.38	58.67	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for GGNBP2 is not avaliable on ENCORE database.

Proteins bound to RNA

GGNBP2 RNA is bound by 18 proteins.

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eCLIP assay for GGNBP2 is not avaliable on ENCORE database.

18 proteins are bound to GGNBP2 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	34937793	34937970	+	CDS,intron-Proximal	4.24207	31.12035	HepG2	BCLAF1
chr17	34937886	34937964	+	CDS	5.02240	22.48175	K562	ZNF622
chr17	34942532	34942600	+	CDS	6.43844	20.50246	HepG2	BCLAF1
chr17	34942304	34942395	+	CDS	4.35210	18.75473	K562	UCHL5
chr17	34943425	34943513	+	CDS,intron-Proximal	5.23582	17.69334	K562	UCHL5
chr17	34942285	34942395	+	CDS	4.24643	17.56831	K562	ZNF622
chr17	34937901	34937970	+	CDS,intron-Proximal	3.87425	17.05386	K562	UCHL5
chr17	34943423	34943549	+	CDS,intron-Proximal	3.74194	16.95507	K562	ZNF622
chr17	34942521	34942604	+	CDS	3.83567	15.30554	K562	ZNF622
chr17	34943425	34943529	+	CDS,intron-Proximal	4.26701	13.66456	HepG2	BCLAF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 71 entries

eCLIP assay for GGNBP2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for GGNBP2 is not available on ENCORE database.
57 RBPs can affect the levels of GGNBP2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for GGNBP2 is not available on ENCORE database.

57 RBPs can affect the gene expression of GGNBP2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
GGNBP2	ENSG00000005955.8	5134.24810	3225.63840	0.67050	19.21040	17.64600	K562	DDX47
GGNBP2	ENSG00000005955.8	5449.46450	3110.78690	0.80870	15.12640	13.89800	K562	PUS1
GGNBP2	ENSG00000005955.8	4160.52590	3031.04410	0.45690	8.57910	7.56150	K562	RBM15
GGNBP2	ENSG00000005955.8	1618.78730	1203.53340	0.42750	7.42100	6.59640	HepG2	SRSF9
GGNBP2	ENSG00000005955.8	2166.08790	1675.46470	0.37040	6.46040	5.73740	HepG2	SSB
GGNBP2	ENSG00000005955.8	2367.26280	1526.22350	0.63320	6.61320	5.34110	K562	RPS19
GGNBP2	ENSG00000005955.8	1165.77170	810.68020	0.52400	5.42950	4.33910	HepG2	FUBP3
GGNBP2	ENSG00000005955.8	1737.46650	1329.75610	0.38570	5.03340	4.31430	HepG2	TAF15
GGNBP2	ENSG00000005955.8	1834.72800	2494.41530	-0.44310	5.40050	4.21210	K562	MAGOH
GGNBP2	ENSG00000005955.8	4180.21540	3136.80350	0.41420	4.95690	4.07250	K562	AKAP8L
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 62 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for GGNBP2 is not available on ENCORE database.

12 RBPs can affect the splicing of GGNBP2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
MXE	GGNBP2	ENSG00000005955.8	chr17	+	34901467	34901666	34910660	34910741	34900736	34900946	34912922	34913176	0.34700	0.00000	0.00012	1included	HepG2	XRN2
MXE	GGNBP2	ENSG00000005955.8	chr17	+	34901467	34901666	34910660	34910741	34900736	34900946	34912922	34913176	0.28100	0.00001	0.00256	1included	HepG2	BCCIP
A5SS	GGNBP2	ENSG00000005955.8	chr17	+	34934412	34934622			34934412	34934616	34935674	34935849	0.19600	0.00002	0.00371	longer	K562	PRPF8
RI	GGNBP2	ENSG00000005955.8	chr17	+	34934412	34935849			34934412	34934616	34935674	34935849	0.12400	0.00002	0.00053	included	K562	PRPF8
MXE	GGNBP2	ENSG00000005955.8	chr17	+	34901467	34901666	34910660	34910741	34900736	34900946	34912922	34913176	0.23000	0.00010	0.00565	1included	HepG2	SUPV3L1
A5SS	GGNBP2	ENSG00000005955.8	chr17	+	34934412	34934622			34934412	34934616	34935674	34935849	-0.08700	0.00014	0.03259	shorter	K562	SF3B1
MXE	GGNBP2	ENSG00000005955.8	chr17	+	34901467	34901666	34910660	34910741	34900736	34900946	34912922	34913176	0.34500	0.00014	0.00534	1included	HepG2	DDX55
A5SS	GGNBP2	ENSG00000005955.8	chr17	+	34934412	34934622			34934412	34934616	34935674	34935849	0.19600	0.00030	0.03107	longer	HepG2	RBM22
SE	GGNBP2	ENSG00000005955.8	chr17	+	34930924	34931167			34923538	34923615	34934412	34934616	-0.05100	0.00039	0.01466	excluded	HepG2	SF3A3
A5SS	GGNBP2	ENSG00000005955.8	chr17	+	34934412	34934622			34934412	34934616	34935674	34935849	-0.14000	0.00066	0.07234	shorter	HepG2	TAF15

Showing 1 to 10 of 14 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

GGNBP2

General Information

Functions

Localization

Domains (AlphaFold: GGNBP2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for GGNBP2 is not avaliable on ENCORE database.

18 proteins are bound to GGNBP2 RNA:

eCLIP assay for GGNBP2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for GGNBP2 is not available on ENCORE database.

57 RBPs can affect the gene expression of GGNBP2 :

The Knockdown/knockout RNA-Seq assay for GGNBP2 is not available on ENCORE database.

12 RBPs can affect the splicing of GGNBP2 :

The Knockdown/knockout RNA-Seq assay for GGNBP2 is not avaliable on ENCORE database.