CEP78

General Information

Gene Name : CEP78
Gene ID : ENSG00000148019.13
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CEP78)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CEP78	ENSG00000148019.13	19.29	18.87	19.08	ENCSR000AEF
HepG2	CEP78	ENSG00000148019.13	10.05	21.64	15.85	ENCSR985KAT
K562	CEP78	ENSG00000148019.13	11.14	13.56	12.35	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CEP78 is not avaliable on ENCORE database.

Proteins bound to RNA

CEP78 RNA is bound by 6 proteins.

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eCLIP assay for CEP78 is not avaliable on ENCORE database.

6 proteins are bound to CEP78 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr9	80864185	80864272	+	intron-Distal	4.84390	10.75098	HepG2	U2AF2
chr9	80863800	80863849	+	intron-Distal,intron-Proximal	5.11651	8.11176	K562	TIA1
chr9	80864047	80864173	+	intron-Distal	3.95468	7.42482	K562	KHSRP
chr9	80864184	80864277	+	intron-Distal	3.26310	6.80591	K562	U2AF2
chr9	80866657	80866759	+	intron-Distal,intron-Proximal	4.82184	6.41859	K562	DGCR8
chr9	80877819	80877901	+	CDS,intron-Distal,intron-Proximal	5.13460	6.37937	HepG2	BCLAF1
chr9	80863791	80863865	+	intron-Distal,intron-Proximal	3.28023	5.96041	K562	KHSRP
chr9	80879065	80879144	+	CDS,intron-Distal,intron-Proximal	3.79107	5.06180	HepG2	BCLAF1
chr9	80866506	80866574	+	intron-Distal	3.01901	4.83983	K562	KHSRP
chr9	80863204	80863272	+	CDS,intron-Distal,intron-Proximal	4.69886	4.78529	HepG2	BCLAF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 17 entries

eCLIP assay for CEP78 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CEP78 is not available on ENCORE database.
103 RBPs can affect the levels of CEP78.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CEP78 is not available on ENCORE database.

103 RBPs can affect the gene expression of CEP78 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CEP78	ENSG00000148019.8	492.79920	1133.57900	-1.20180	34.08710	32.84140	HepG2	SRFBP1
CEP78	ENSG00000148019.8	331.50770	797.32410	-1.26610	31.91750	30.21470	HepG2	CKAP4
CEP78	ENSG00000148019.8	392.23520	901.59090	-1.20080	22.11390	20.93010	HepG2	ZNF622
CEP78	ENSG00000148019.8	217.87540	566.38170	-1.37830	21.87460	20.71790	HepG2	TIAL1
CEP78	ENSG00000148019.8	1182.52500	634.01960	0.89920	19.57420	18.55770	HepG2	SRSF1
CEP78	ENSG00000148019.8	390.60890	819.76550	-1.06950	20.03060	18.48970	HepG2	UPF1
CEP78	ENSG00000148019.8	331.04760	790.64720	-1.25600	18.37690	16.80440	HepG2	TARDBP
CEP78	ENSG00000148019.8	358.90560	849.93660	-1.24380	15.87400	14.46090	HepG2	GPKOW
CEP78	ENSG00000148019.8	279.89220	571.35530	-1.02950	14.97290	13.80990	HepG2	TRIM56
CEP78	ENSG00000148019.8	466.53770	797.39280	-0.77330	13.40810	12.28140	HepG2	ACO1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 117 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CEP78 is not available on ENCORE database.

11 RBPs can affect the splicing of CEP78 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CEP78	ENSG00000148019.8	chr9	+	80880774	80880822	80880287	80880459	80881357	80881983	0.41900	0.00001	0.01584	included	HepG2	UPF1
SE	CEP78	ENSG00000148019.8	chr9	+	80855207	80855280	80854938	80855111	80856611	80856715	-0.22600	0.00002	0.00115	excluded	HepG2	SF3A3
SE	CEP78	ENSG00000148019.8	chr9	+	80880774	80880822	80880287	80880459	80881357	80881983	-0.26700	0.00002	0.00059	excluded	K562	U2AF2
SE	CEP78	ENSG00000148019.8	chr9	+	80861584	80861698	80858377	80858552	80863206	80863271	-0.20600	0.00007	0.00124	excluded	K562	AQR
SE	CEP78	ENSG00000148019.8	chr9	+	80861584	80861698	80858377	80858552	80863206	80863271	-0.31000	0.00007	0.00254	excluded	K562	U2AF1
SE	CEP78	ENSG00000148019.8	chr9	+	80880774	80880822	80880287	80880459	80881357	80881983	0.44000	0.00009	0.00763	included	HepG2	PTBP1
SE	CEP78	ENSG00000148019.8	chr9	+	80880774	80880822	80880287	80880459	80881357	80881983	-0.20800	0.00029	0.01043	excluded	K562	RBM15
SE	CEP78	ENSG00000148019.8	chr9	+	80880774	80880822	80880287	80880459	80881357	80881983	0.40900	0.00044	0.02410	included	HepG2	SF3B4
SE	CEP78	ENSG00000148019.8	chr9	+	80880774	80880822	80880287	80880459	80881357	80881983	0.39200	0.00053	0.02933	included	HepG2	PCBP1
SE	CEP78	ENSG00000148019.8	chr9	+	80880774	80880822	80880287	80880459	80881357	80881983	-0.20400	0.00054	0.01939	excluded	K562	AKAP8L

Showing 1 to 10 of 16 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CEP78

General Information

Functions

Localization

Domains (AlphaFold: CEP78)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CEP78 is not avaliable on ENCORE database.

6 proteins are bound to CEP78 RNA:

eCLIP assay for CEP78 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CEP78 is not available on ENCORE database.

103 RBPs can affect the gene expression of CEP78 :

The Knockdown/knockout RNA-Seq assay for CEP78 is not available on ENCORE database.

11 RBPs can affect the splicing of CEP78 :

The Knockdown/knockout RNA-Seq assay for CEP78 is not avaliable on ENCORE database.