ATG12

General Information

Gene Name : ATG12
Gene ID : ENSG00000145782.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ATG12)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ATG12	ENSG00000145782.12	36.00	34.49	35.25	ENCSR000AEF
HepG2	ATG12	ENSG00000145782.12	26.75	39.88	33.31	ENCSR985KAT
K562	ATG12	ENSG00000145782.12	44.58	41.24	42.91	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ATG12 is not avaliable on ENCORE database.

Proteins bound to RNA

ATG12 RNA is bound by 15 proteins.

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eCLIP assay for ATG12 is not avaliable on ENCORE database.

15 proteins are bound to ATG12 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	115166423	115166542	-	3'-UTR,intron-Distal	6.09871	36.39790	HepG2	UPF1
chr5	115166469	115166531	-	3'-UTR,intron-Distal	3.61786	19.39206	K562	UPF1
chr5	115166408	115166469	-	3'-UTR,intron-Distal	4.98261	19.34116	K562	UPF1
chr5	115166322	115166370	-	3'-UTR,intron-Distal,intron-Proximal	4.84691	18.26619	K562	UPF1
chr5	115166270	115166315	-	3'-UTR,intron-Distal,intron-Proximal	4.13667	10.50859	K562	UPF1
chr5	115165415	115165476	-	3'-UTR,intron-Distal	5.35576	9.20661	K562	UPF1
chr5	115167348	115167515	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.91812	8.08603	HepG2	BCLAF1
chr5	115177083	115177231	-	CDS,intron-Distal	4.15555	7.58497	HepG2	GRWD1
chr5	115168297	115168387	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.15157	7.53537	HepG2	U2AF2
chr5	115165762	115165816	-	3'-UTR,intron-Distal	3.85834	7.50442	K562	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 28 entries

eCLIP assay for ATG12 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ATG12 is not available on ENCORE database.
61 RBPs can affect the levels of ATG12.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ATG12 is not available on ENCORE database.

61 RBPs can affect the gene expression of ATG12 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ATG12	ENSG00000145782.8	703.59840	1380.96950	-0.97290	28.58680	26.93820	HepG2	SUCLG1
ATG12	ENSG00000145782.8	448.41260	908.07910	-1.01800	22.34230	20.73920	HepG2	HNRNPU
ATG12	ENSG00000145782.8	481.57320	882.46610	-0.87380	13.57620	12.61120	HepG2	TIAL1
ATG12	ENSG00000145782.8	787.10770	1304.56650	-0.72890	11.65930	10.33270	HepG2	PUM2
ATG12	ENSG00000145782.8	1557.58610	1037.16280	0.58660	9.75310	8.91560	HepG2	RBM22
ATG12	ENSG00000145782.8	542.81530	806.77700	-0.57170	8.74340	7.66220	HepG2	DNAJC2
ATG12	ENSG00000145782.8	834.56660	1214.28580	-0.54100	8.56150	7.53750	HepG2	SRSF5
ATG12	ENSG00000145782.8	1614.32090	1171.43600	0.46250	8.26820	7.52930	HepG2	SRFBP1
ATG12	ENSG00000145782.8	855.60280	1288.32780	-0.59050	8.57850	7.26220	HepG2	NOL12
ATG12	ENSG00000145782.8	728.42080	1113.07070	-0.61170	7.56960	6.26730	K562	CPSF6
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 67 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ATG12 is not available on ENCORE database.

6 RBPs can affect the splicing of ATG12 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	ATG12	ENSG00000145782.8	chr5	-	115176193	115176309	115173324	115173461	115177086	115177534	0.07100	0.00000	0.00948	included	HepG2	IGF2BP1
SE	ATG12	ENSG00000145782.8	chr5	-	115176514	115176631	115173324	115173461	115177086	115177241	0.13100	0.00000	0.00000	included	K562	HNRNPC
SE	ATG12	ENSG00000145782.8	chr5	-	115176193	115176309	115173324	115173461	115176514	115176631	-0.68500	0.00004	0.00131	excluded	K562	SF3B4
A3SS	ATG12	ENSG00000145782.8	chr5	-	115168298	115168440	115168298	115168361	115173324	115173444	0.05800	0.00006	0.00056	longer	K562	AQR
SE	ATG12	ENSG00000145782.8	chr5	-	115176193	115176309	115173324	115173461	115176514	115176631	-0.61200	0.00018	0.00444	excluded	K562	HNRNPC
SE	ATG12	ENSG00000145782.8	chr5	-	115176193	115176309	115173324	115173461	115177086	115177534	-0.05500	0.00021	0.01422	excluded	HepG2	SFPQ
SE	ATG12	ENSG00000145782.8	chr5	-	115176193	115176309	115173324	115173461	115176514	115176631	-0.63200	0.00157	0.02888	excluded	K562	U2AF2

Showing 1 to 7 of 7 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ATG12

General Information

Functions

Localization

Domains (AlphaFold: ATG12)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ATG12 is not avaliable on ENCORE database.

15 proteins are bound to ATG12 RNA:

eCLIP assay for ATG12 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ATG12 is not available on ENCORE database.

61 RBPs can affect the gene expression of ATG12 :

The Knockdown/knockout RNA-Seq assay for ATG12 is not available on ENCORE database.

6 RBPs can affect the splicing of ATG12 :

The Knockdown/knockout RNA-Seq assay for ATG12 is not avaliable on ENCORE database.