VTN

General Information

Gene Name : VTN
Gene ID : ENSG00000109072.13
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: VTN)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	VTN	ENSG00000109072.13	0.44	0.12	0.28	ENCSR000AEF
HepG2	VTN	ENSG00000109072.13	107.52	75.08	91.30	ENCSR985KAT
K562	VTN	ENSG00000109072.13	0.49	0.09	0.29	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for VTN is not avaliable on ENCORE database.

Proteins bound to RNA

VTN RNA is bound by 11 proteins.

CanvasJS.com

eCLIP assay for VTN is not avaliable on ENCORE database.

11 proteins are bound to VTN RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	26694302	26694379	-	3'-UTR,intron-Distal,intron-Proximal	6.06878	400.00000	HepG2	PCBP2
chr17	26696710	26696794	-	5'-UTR,CDS,intron-Distal	5.59001	63.67753	HepG2	SND1
chr17	26694998	26695062	-	5'-UTR,CDS,intron-Distal,intron-Proximal	6.73814	59.62716	HepG2	SND1
chr17	26695541	26695607	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.79906	56.51435	HepG2	SND1
chr17	26694318	26694388	-	3'-UTR,intron-Distal,intron-Proximal	4.81035	52.85029	HepG2	PCBP1
chr17	26694818	26694898	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.08711	52.37470	HepG2	SND1
chr17	26697157	26697216	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.28347	49.07902	HepG2	DDX3X
chr17	26696342	26696434	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.86331	47.66573	HepG2	SND1
chr17	26694955	26694998	-	5'-UTR,CDS,intron-Distal,intron-Proximal	6.41757	47.03325	HepG2	SND1
chr17	26695929	26695983	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.57561	44.70542	HepG2	SND1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 54 entries

eCLIP assay for VTN is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for VTN is not available on ENCORE database.
154 RBPs can affect the levels of VTN.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for VTN is not available on ENCORE database.

154 RBPs can affect the gene expression of VTN :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
VTN	ENSG00000109072.9	20306.23190	4791.81790	2.08320	239.01640	236.52310	HepG2	SSB
VTN	ENSG00000109072.9	19359.47280	4870.88940	1.99070	231.69660	228.55600	HepG2	DKC1
VTN	ENSG00000109072.9	973.76380	17577.26480	-4.17400	215.94760	212.73460	HepG2	AKAP1
VTN	ENSG00000109072.9	3680.65110	12895.24350	-1.80880	204.56810	201.56010	HepG2	SRSF9
VTN	ENSG00000109072.9	16587.65310	5185.77930	1.67740	197.60710	194.26880	HepG2	PUS1
VTN	ENSG00000109072.9	10246.01600	1235.62180	3.05170	163.96950	160.75250	HepG2	HNRNPLL
VTN	ENSG00000109072.9	10420.11860	1294.74380	3.00850	133.00330	129.80480	HepG2	GPKOW
VTN	ENSG00000109072.9	8131.52340	2134.14000	1.92980	111.55520	108.37530	HepG2	IGF2BP1
VTN	ENSG00000109072.9	1455.25770	5091.34080	-1.80680	109.00140	106.64880	HepG2	ACO1
VTN	ENSG00000109072.9	8283.90490	1205.05100	2.78110	107.63910	104.38400	HepG2	TARDBP
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 165 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for VTN is not available on ENCORE database.

1 RBPs can affect the splicing of VTN :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
SE	VTN	ENSG00000109072.9	chr17	-	26694735	26694839			26694296	26694502	26695541	26695958	-0.09100	0.00000	0.00000	excluded	HepG2	HNRNPL

Showing 1 to 1 of 1 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

VTN

General Information

Functions

Localization

Domains (AlphaFold: VTN)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for VTN is not avaliable on ENCORE database.

11 proteins are bound to VTN RNA:

eCLIP assay for VTN is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for VTN is not available on ENCORE database.

154 RBPs can affect the gene expression of VTN :

The Knockdown/knockout RNA-Seq assay for VTN is not available on ENCORE database.

1 RBPs can affect the splicing of VTN :

The Knockdown/knockout RNA-Seq assay for VTN is not avaliable on ENCORE database.