TRAPPC12

General Information

Gene Name : TRAPPC12
Gene ID : ENSG00000171853.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TRAPPC12)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TRAPPC12	ENSG00000171853.15	10.88	25.96	18.42	ENCSR000AEF
HepG2	TRAPPC12	ENSG00000171853.15	66.94	35.63	51.28	ENCSR985KAT
K562	TRAPPC12	ENSG00000171853.15	33.77	29.75	31.76	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TRAPPC12 is not avaliable on ENCORE database.

Proteins bound to RNA

TRAPPC12 RNA is bound by 36 proteins.

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eCLIP assay for TRAPPC12 is not avaliable on ENCORE database.

36 proteins are bound to TRAPPC12 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	3469418	3469510	+	5'-UTR,CDS,intron-Proximal	5.20973	26.13042	HepG2	PRPF8
chr2	3476042	3476113	+	intron-Distal	4.61007	19.10701	K562	SLTM
chr2	3476932	3477020	+	intron-Distal	4.84970	19.08947	K562	SLTM
chr2	3473795	3473911	+	intron-Distal	3.42932	15.34103	HepG2	HLTF
chr2	3475558	3475615	+	intron-Distal	5.09036	13.97236	K562	SLTM
chr2	3472503	3472586	+	intron-Distal	5.96515	13.84977	K562	SLTM
chr2	3471700	3471792	+	intron-Distal	4.60316	13.80994	K562	SLTM
chr2	3483339	3483434	+	3'-UTR,intron-Distal	4.70159	13.47567	HepG2	CSTF2
chr2	3475695	3475740	+	intron-Distal	5.82748	13.37667	K562	SLTM
chr2	3476559	3476615	+	intron-Distal	4.38176	13.01897	K562	SLTM
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 200 entries

eCLIP assay for TRAPPC12 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TRAPPC12 is not available on ENCORE database.
95 RBPs can affect the levels of TRAPPC12.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TRAPPC12 is not available on ENCORE database.

95 RBPs can affect the gene expression of TRAPPC12 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TRAPPC12	ENSG00000171853.11	1483.03600	755.29650	0.97330	33.58010	32.21850	HepG2	ZNF622
TRAPPC12	ENSG00000171853.11	1040.41270	479.00990	1.11890	30.33440	28.88430	HepG2	SRSF9
TRAPPC12	ENSG00000171853.11	1272.70350	673.67730	0.91770	24.87280	23.31500	HepG2	SUCLG1
TRAPPC12	ENSG00000171853.11	1129.17580	636.87190	0.82610	20.80640	19.48620	HepG2	PUM1
TRAPPC12	ENSG00000171853.11	1217.60870	574.66690	1.08320	17.08010	15.49910	HepG2	HNRNPK
TRAPPC12	ENSG00000171853.11	1506.53340	959.55720	0.65070	14.01000	13.11420	HepG2	SRFBP1
TRAPPC12	ENSG00000171853.11	1133.96200	548.40430	1.04800	14.05060	12.78220	HepG2	EIF2S1
TRAPPC12	ENSG00000171853.11	999.23760	592.36230	0.75420	13.79600	12.54500	HepG2	SRSF5
TRAPPC12	ENSG00000171853.11	739.41870	419.97140	0.81600	13.64020	12.52480	HepG2	TRIM56
TRAPPC12	ENSG00000171853.11	1123.61310	706.61600	0.66900	13.10520	11.98670	HepG2	ACO1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 104 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TRAPPC12 is not available on ENCORE database.

11 RBPs can affect the splicing of TRAPPC12 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	TRAPPC12	ENSG00000171853.11	chr2	+	3460920	3461000			3447549	3447662	3461391	3461464	0.22700	0.00000	0.00062	included	HepG2	DDX59
SE	TRAPPC12	ENSG00000171853.11	chr2	+	3460920	3461000			3447549	3447662	3461391	3461464	0.11000	0.00001	0.00036	included	HepG2	U2AF2
MXE	TRAPPC12	ENSG00000171853.11	chr2	+	3428295	3428434	3447549	3447662	3405547	3405664	3461391	3461464	0.25000	0.00004	0.00278	1included	K562	AGGF1
SE	TRAPPC12	ENSG00000171853.11	chr2	+	3481465	3481566			3469367	3469466	3482616	3482704	0.06900	0.00007	0.00787	included	HepG2	AKAP1
SE	TRAPPC12	ENSG00000171853.11	chr2	+	3425470	3425557			3405547	3405664	3425651	3425765	0.10200	0.00028	0.00418	included	K562	AQR
SE	TRAPPC12	ENSG00000171853.11	chr2	+	3425651	3425765			3405547	3405664	3428295	3428434	-0.21000	0.00047	0.01529	excluded	K562	AGGF1
SE	TRAPPC12	ENSG00000171853.11	chr2	+	3481465	3481566			3469367	3469466	3482616	3482704	-0.12900	0.00069	0.02058	excluded	K562	RBM15
SE	TRAPPC12	ENSG00000171853.11	chr2	+	3392953	3393119			3391390	3392441	3405547	3405664	0.08400	0.00172	0.04665	included	HepG2	SF3A3
SE	TRAPPC12	ENSG00000171853.11	chr2	+	3425470	3425557			3405547	3405664	3425651	3425741	0.09700	0.00210	0.08069	included	HepG2	SF3B4
SE	TRAPPC12	ENSG00000171853.11	chr2	+	3481465	3481566			3469367	3469466	3482616	3482704	-0.12300	0.00275	0.07196	excluded	K562	UTP18

Showing 1 to 10 of 14 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TRAPPC12

General Information

Functions

Localization

Domains (AlphaFold: TRAPPC12)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TRAPPC12 is not avaliable on ENCORE database.

36 proteins are bound to TRAPPC12 RNA:

eCLIP assay for TRAPPC12 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TRAPPC12 is not available on ENCORE database.

95 RBPs can affect the gene expression of TRAPPC12 :

The Knockdown/knockout RNA-Seq assay for TRAPPC12 is not available on ENCORE database.

11 RBPs can affect the splicing of TRAPPC12 :

The Knockdown/knockout RNA-Seq assay for TRAPPC12 is not avaliable on ENCORE database.