TMEM41B

General Information

Gene Name : TMEM41B
Gene ID : ENSG00000166471.10
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TMEM41B)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TMEM41B	ENSG00000166471.10	12.19	10.32	11.25	ENCSR000AEF
HepG2	TMEM41B	ENSG00000166471.10	14.00	20.74	17.37	ENCSR985KAT
K562	TMEM41B	ENSG00000166471.10	20.30	19.34	19.82	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TMEM41B is not avaliable on ENCORE database.

Proteins bound to RNA

TMEM41B RNA is bound by 26 proteins.

CanvasJS.com

eCLIP assay for TMEM41B is not avaliable on ENCORE database.

26 proteins are bound to TMEM41B RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	9316832	9316935	-	CDS,intron-Distal,intron-Proximal	3.52765	22.45797	K562	ZNF622
chr11	9305069	9305132	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.95770	21.35161	K562	U2AF2
chr11	9316889	9316919	-	CDS,intron-Distal	3.42080	19.89743	HepG2	BCLAF1
chr11	9316851	9316889	-	CDS,intron-Distal	4.58114	19.54515	HepG2	BCLAF1
chr11	9316799	9316851	-	CDS,intron-Distal,intron-Proximal	4.82244	17.52604	HepG2	BCLAF1
chr11	9302495	9302586	-	3'-UTR,intron-Distal	3.62451	16.61876	K562	ZC3H11A
chr11	9305132	9305147	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.68592	16.20387	K562	U2AF2
chr11	9309275	9309368	-	CDS,intron-Distal,intron-Proximal	4.01513	15.96646	HepG2	U2AF2
chr11	9305046	9305142	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.59044	15.83723	HepG2	BCLAF1
chr11	9308030	9308103	-	3'-UTR,CDS,intron-Distal	4.66911	15.55279	HepG2	BCLAF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 91 entries

eCLIP assay for TMEM41B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TMEM41B is not available on ENCORE database.
105 RBPs can affect the levels of TMEM41B.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TMEM41B is not available on ENCORE database.

105 RBPs can affect the gene expression of TMEM41B :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TMEM41B	ENSG00000166471.6	875.91220	1628.48700	-0.89470	20.83630	18.60410	K562	EIF3G
TMEM41B	ENSG00000166471.6	1553.82570	2860.86820	-0.88060	19.14170	17.47170	K562	PTBP1
TMEM41B	ENSG00000166471.6	369.05340	809.94260	-1.13400	17.31270	15.79150	HepG2	DDX21
TMEM41B	ENSG00000166471.6	666.05280	1125.70120	-0.75710	16.42520	15.20700	HepG2	ACO1
TMEM41B	ENSG00000166471.6	2587.79090	1499.54700	0.78710	15.47040	13.94580	HepG2	RBM25
TMEM41B	ENSG00000166471.6	1709.18360	2804.49490	-0.71440	13.81100	12.22910	K562	SRSF1
TMEM41B	ENSG00000166471.6	1505.75110	888.96210	0.76020	13.35690	11.88190	HepG2	CALR
TMEM41B	ENSG00000166471.6	1277.74550	667.06360	0.93760	13.04170	11.80790	HepG2	HNRNPLL
TMEM41B	ENSG00000166471.6	561.57700	997.27030	-0.82850	12.88530	11.12400	K562	SYNCRIP
TMEM41B	ENSG00000166471.6	658.91090	1245.37360	-0.91840	12.50360	10.89810	K562	PRPF8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 124 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TMEM41B is not available on ENCORE database.

13 RBPs can affect the splicing of TMEM41B :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	TMEM41B	ENSG00000166471.6	chr11	-	9309988	9310089	9309988	9310082	9316805	9316934	0.11000	0.00000	0.00004	longer	K562	AQR
RI	TMEM41B	ENSG00000166471.6	chr11	-	9302200	9305140	9302200	9302588	9304917	9305140	-0.45600	0.00000	0.00000	excluded	HepG2	U2AF2
RI	TMEM41B	ENSG00000166471.6	chr11	-	9302200	9305140	9302200	9302588	9304917	9305140	-0.35200	0.00000	0.00000	excluded	K562	U2AF2
RI	TMEM41B	ENSG00000166471.6	chr11	-	9302200	9305140	9302200	9302588	9304917	9305140	-0.20300	0.00032	0.01789	excluded	HepG2	XRN2
RI	TMEM41B	ENSG00000166471.6	chr11	-	9302200	9305140	9302200	9302588	9304917	9305140	-0.16000	0.00087	0.07643	excluded	K562	SERBP1
RI	TMEM41B	ENSG00000166471.6	chr11	-	9302200	9305140	9302200	9302588	9304917	9305140	-0.11100	0.00102	0.08587	excluded	K562	TROVE2
RI	TMEM41B	ENSG00000166471.6	chr11	-	9302200	9305140	9302200	9302588	9304917	9305140	-0.23600	0.00117	0.07083	excluded	HepG2	DDX6
RI	TMEM41B	ENSG00000166471.6	chr11	-	9302200	9305140	9302200	9302588	9304917	9305140	-0.17000	0.00117	0.01657	excluded	K562	PRPF8
RI	TMEM41B	ENSG00000166471.6	chr11	-	9302200	9305140	9302200	9302588	9304917	9305140	-0.12400	0.00138	0.04665	excluded	K562	TARDBP
RI	TMEM41B	ENSG00000166471.6	chr11	-	9302200	9305140	9302200	9302588	9304917	9305140	-0.11100	0.00146	0.02971	excluded	K562	U2AF1

Showing 1 to 10 of 15 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TMEM41B

General Information

Functions

Localization

Domains (AlphaFold: TMEM41B)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TMEM41B is not avaliable on ENCORE database.

26 proteins are bound to TMEM41B RNA:

eCLIP assay for TMEM41B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TMEM41B is not available on ENCORE database.

105 RBPs can affect the gene expression of TMEM41B :

The Knockdown/knockout RNA-Seq assay for TMEM41B is not available on ENCORE database.

13 RBPs can affect the splicing of TMEM41B :

The Knockdown/knockout RNA-Seq assay for TMEM41B is not avaliable on ENCORE database.