THAP9-AS1

General Information

Gene Name : THAP9-AS1
Gene ID : ENSG00000251022.6
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: THAP9-AS1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	THAP9-AS1	ENSG00000251022.6	43.85	35.65	39.75	ENCSR000AEF
HepG2	THAP9-AS1	ENSG00000251022.6	13.24	23.05	18.14	ENCSR985KAT
K562	THAP9-AS1	ENSG00000251022.6	48.79	60.57	54.68	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for THAP9-AS1 is not avaliable on ENCORE database.

Proteins bound to RNA

THAP9-AS1 RNA is bound by 42 proteins.

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eCLIP assay for THAP9-AS1 is not avaliable on ENCORE database.

42 proteins are bound to THAP9-AS1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr4	83817005	83817064	-	intron-Distal,intron-Proximal	6.96525	400.00000	HepG2	DKC1
chr4	83817005	83817068	-	intron-Distal,intron-Proximal	8.18705	400.00000	HepG2	NOLC1
chr4	83819299	83819376	-	intron-Distal,intron-Proximal	8.08980	138.30429	HepG2	NOLC1
chr4	83817005	83817065	-	intron-Distal,intron-Proximal	7.88774	114.59674	K562	AATF
chr4	83817006	83817029	-	intron-Distal,intron-Proximal	5.78386	79.01685	K562	PHF6
chr4	83817039	83817078	-	intron-Distal	5.47773	78.56589	K562	PHF6
chr4	83817029	83817039	-	intron-Distal	5.67009	77.74492	K562	PHF6
chr4	83817005	83817065	-	intron-Distal,intron-Proximal	4.59862	74.31507	K562	SMNDC1
chr4	83817005	83817066	-	intron-Distal,intron-Proximal	3.90303	57.36794	K562	PTBP1
chr4	83817015	83817064	-	intron-Distal,intron-Proximal	4.83142	57.22483	K562	SF3B4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 66 entries

eCLIP assay for THAP9-AS1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for THAP9-AS1 is not available on ENCORE database.
79 RBPs can affect the levels of THAP9-AS1.

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The Knockdown/knockout RNA-Seq assay for THAP9-AS1 is not available on ENCORE database.

79 RBPs can affect the gene expression of THAP9-AS1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
THAP9-AS1	ENSG00000251022.2	1026.62960	1767.02640	-0.78340	18.44930	16.99620	K562	FXR1
THAP9-AS1	ENSG00000251022.2	835.72440	371.72090	1.16870	16.51740	15.31340	HepG2	TAF15
THAP9-AS1	ENSG00000251022.2	4612.20130	2511.58330	0.87680	14.75810	13.55230	K562	AQR
THAP9-AS1	ENSG00000251022.2	694.51860	341.59380	1.02360	15.10380	13.18630	HepG2	TIA1
THAP9-AS1	ENSG00000251022.2	3443.20820	2442.64020	0.49520	12.10140	11.00790	K562	AGGF1
THAP9-AS1	ENSG00000251022.2	1085.75800	699.40180	0.63440	11.18530	10.36090	HepG2	SRFBP1
THAP9-AS1	ENSG00000251022.2	371.24590	694.63380	-0.90390	11.30110	10.20660	HepG2	PUF60
THAP9-AS1	ENSG00000251022.2	665.51920	374.08800	0.83100	9.37490	8.18880	HepG2	RBM25
THAP9-AS1	ENSG00000251022.2	476.33890	733.88960	-0.62360	9.41270	8.17050	HepG2	DAZAP1
THAP9-AS1	ENSG00000251022.2	1302.76780	444.49300	1.55120	9.54130	8.10010	HepG2	SNRNP70
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 87 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for THAP9-AS1 is not available on ENCORE database.

39 RBPs can affect the splicing of THAP9-AS1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	THAP9-AS1	ENSG00000251022.2	chr4	-	83816844	83816927	83814161	83816000	83821229	83821376	0.37900	0.00000	included	K562	SRSF1
SE	THAP9-AS1	ENSG00000251022.2	chr4	-	83820865	83820890	83818945	83819215	83821229	83821376	0.22500	0.00058	included	K562	XRCC6
SE	THAP9-AS1	ENSG00000251022.2	chr4	-	83820865	83820890	83819141	83819215	83821229	83821376	0.16300	0.01296	included	K562	PHF6
SE	THAP9-AS1	ENSG00000251022.2	chr4	-	83816844	83816927	83814161	83816000	83821229	83821376	-0.32700	0.00000	excluded	K562	AQR
SE	THAP9-AS1	ENSG00000251022.2	chr4	-	83819141	83819215	83814161	83816000	83821229	83821376	-0.48000	0.00000	excluded	K562	PUS1
SE	THAP9-AS1	ENSG00000251022.2	chr4	-	83820865	83820890	83819141	83819215	83821229	83821376	0.17900	0.00000	included	K562	HNRNPUL1
SE	THAP9-AS1	ENSG00000251022.2	chr4	-	83816844	83816927	83814161	83816000	83821229	83821376	-0.27800	0.00006	excluded	K562	HNRNPU
SE	THAP9-AS1	ENSG00000251022.2	chr4	-	83819141	83819215	83814161	83816000	83821229	83821376	-0.29900	0.00000	excluded	K562	RBM15
SE	THAP9-AS1	ENSG00000251022.2	chr4	-	83819141	83819215	83814161	83816000	83821229	83821376	-0.43700	0.00000	excluded	K562	AGGF1
RI	THAP9-AS1	ENSG00000251022.2	chr4	-	83821229	83821719	83821229	83821376	83821486	83821719	0.08000	0.00000	included	K562	AQR

Showing 1 to 10 of 50 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

THAP9-AS1

General Information

Functions

Localization

Domains (AlphaFold: THAP9-AS1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for THAP9-AS1 is not avaliable on ENCORE database.

42 proteins are bound to THAP9-AS1 RNA:

eCLIP assay for THAP9-AS1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for THAP9-AS1 is not available on ENCORE database.

79 RBPs can affect the gene expression of THAP9-AS1 :

The Knockdown/knockout RNA-Seq assay for THAP9-AS1 is not available on ENCORE database.

39 RBPs can affect the splicing of THAP9-AS1 :

The Knockdown/knockout RNA-Seq assay for THAP9-AS1 is not avaliable on ENCORE database.