SSBP4

General Information

Gene Name : SSBP4
Gene ID : ENSG00000130511.15
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SSBP4)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SSBP4	ENSG00000130511.15	4.48	15.30	9.89	ENCSR000AEF
HepG2	SSBP4	ENSG00000130511.15	46.96	11.19	29.07	ENCSR985KAT
K562	SSBP4	ENSG00000130511.15	82.34	26.20	54.27	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SSBP4 is not avaliable on ENCORE database.

Proteins bound to RNA

SSBP4 RNA is bound by 44 proteins.

CanvasJS.com

eCLIP assay for SSBP4 is not avaliable on ENCORE database.

44 proteins are bound to SSBP4 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	18544862	18545021	+	intron-Distal,intron-Proximal	6.92729	63.14990	HepG2	PCBP2
chr19	18544870	18545003	+	intron-Distal,intron-Proximal	5.45824	43.70763	HepG2	HNRNPK
chr19	18544794	18544860	+	intron-Distal,intron-Proximal	6.53365	38.36659	HepG2	DDX59
chr19	18543028	18543079	+	intron-Proximal	7.41276	34.22784	K562	AQR
chr19	18544806	18544870	+	intron-Distal,intron-Proximal	7.06012	33.89741	HepG2	HNRNPK
chr19	18544942	18544986	+	intron-Proximal	5.50790	33.87646	HepG2	DDX59
chr19	18544799	18544996	+	intron-Distal,intron-Proximal	7.02223	29.18860	K562	HNRNPK
chr19	18534159	18534316	+	intron-Distal	5.04914	28.25769	K562	EWSR1
chr19	18544748	18544862	+	intron-Distal,intron-Proximal	6.93665	27.73038	HepG2	PCBP2
chr19	18544860	18544888	+	intron-Distal	4.95260	26.99935	HepG2	DDX59
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 303 entries

eCLIP assay for SSBP4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SSBP4 is not available on ENCORE database.
105 RBPs can affect the levels of SSBP4.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SSBP4 is not available on ENCORE database.

105 RBPs can affect the gene expression of SSBP4 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SSBP4	ENSG00000130511.11	1704.34990	804.25190	1.08340	36.37340	34.37060	K562	AGGF1
SSBP4	ENSG00000130511.11	353.50410	88.09320	2.00450	26.43990	24.33890	HepG2	PPIL4
SSBP4	ENSG00000130511.11	304.52450	87.95640	1.79160	23.18040	21.56060	HepG2	SAFB2
SSBP4	ENSG00000130511.11	454.66310	96.83040	2.23120	19.76280	18.43080	HepG2	TRIM56
SSBP4	ENSG00000130511.11	583.98460	207.50380	1.49270	20.53060	18.24950	K562	TARDBP
SSBP4	ENSG00000130511.11	537.91910	200.18010	1.42600	20.31860	17.95200	K562	TIA1
SSBP4	ENSG00000130511.11	93.56090	313.95220	-1.74660	18.64870	17.64930	HepG2	SRSF1
SSBP4	ENSG00000130511.11	475.08790	188.05360	1.33700	16.55570	15.35520	HepG2	PUM1
SSBP4	ENSG00000130511.11	553.61810	215.28180	1.36260	17.53400	15.26940	K562	MAGOH
SSBP4	ENSG00000130511.11	405.82100	1190.83780	-1.55310	15.05280	13.83580	K562	AQR
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 120 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SSBP4 is not available on ENCORE database.

10 RBPs can affect the splicing of SSBP4 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SSBP4	ENSG00000130511.11	chr19	+	18542162	18542228			18541650	18541740	18542456	18542516	0.65200	0.00000	0.00000	included	HepG2	HNRNPK
SE	SSBP4	ENSG00000130511.11	chr19	+	18542162	18542228			18541650	18541740	18542456	18542516	0.16500	0.00000	0.00326	included	K562	SAFB
SE	SSBP4	ENSG00000130511.11	chr19	+	18542162	18542228			18541650	18541740	18542456	18542516	-0.31700	0.00000	0.00002	excluded	K562	HNRNPC
RI	SSBP4	ENSG00000130511.11	chr19	+	18543368	18543545			18543368	18543414	18543509	18543545	0.10300	0.00000	0.00008	included	HepG2	RBM22
MXE	SSBP4	ENSG00000130511.11	chr19	+	18541650	18541740	18542456	18542516	18538707	18538792	18542602	18542648	-0.36300	0.00000	0.00022	2included	K562	TARDBP
MXE	SSBP4	ENSG00000130511.11	chr19	+	18542162	18542228	18542456	18542516	18541650	18541740	18542602	18542672	0.16800	0.00000	0.00010	1included	K562	SAFB
MXE	SSBP4	ENSG00000130511.11	chr19	+	18542162	18542228	18542456	18542516	18541650	18541740	18542809	18542880	0.13700	0.00000	0.00011	1included	K562	SAFB
MXE	SSBP4	ENSG00000130511.11	chr19	+	18542162	18542228	18542456	18542516	18541650	18541740	18542809	18542880	-0.28800	0.00000	0.00007	2included	K562	HNRNPC
MXE	SSBP4	ENSG00000130511.11	chr19	+	18542162	18542228	18542456	18542516	18541650	18541740	18542809	18542880	-0.17400	0.00000	0.00004	2included	K562	AKAP8L
SE	SSBP4	ENSG00000130511.11	chr19	+	18542162	18542228			18541650	18541740	18542456	18542516	-0.15300	0.00001	0.00091	excluded	K562	AKAP8L

Showing 1 to 10 of 18 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SSBP4

General Information

Functions

Localization

Domains (AlphaFold: SSBP4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SSBP4 is not avaliable on ENCORE database.

44 proteins are bound to SSBP4 RNA:

eCLIP assay for SSBP4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SSBP4 is not available on ENCORE database.

105 RBPs can affect the gene expression of SSBP4 :

The Knockdown/knockout RNA-Seq assay for SSBP4 is not available on ENCORE database.

10 RBPs can affect the splicing of SSBP4 :

The Knockdown/knockout RNA-Seq assay for SSBP4 is not avaliable on ENCORE database.