SMAP2

General Information

Gene Name : SMAP2
Gene ID : ENSG00000084070.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SMAP2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SMAP2	ENSG00000084070.11	140.75	120.14	130.44	ENCSR000AEF
HepG2	SMAP2	ENSG00000084070.11	17.64	23.54	20.59	ENCSR985KAT
K562	SMAP2	ENSG00000084070.11	125.31	142.84	134.07	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SMAP2 is not avaliable on ENCORE database.

Proteins bound to RNA

SMAP2 RNA is bound by 40 proteins.

CanvasJS.com

eCLIP assay for SMAP2 is not avaliable on ENCORE database.

40 proteins are bound to SMAP2 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	40888541	40888634	+	3'-UTR	5.14762	66.55051	K562	TARDBP
chr1	40840308	40840363	+	5'-UTR,intron-Distal	7.30270	56.59091	K562	EIF4G2
chr1	40888360	40888384	+	3'-UTR	5.41421	42.41392	K562	YBX3
chr1	40888915	40888980	+	3'-UTR	5.37682	37.79841	K562	PUM2
chr1	40888668	40888710	+	3'-UTR	3.65501	35.51606	K562	PABPC4
chr1	40888090	40888176	+	3'-UTR	4.78802	35.00760	K562	PUM2
chr1	40840244	40840308	+	intron-Distal	5.99515	34.79482	K562	EIF4G2
chr1	40888384	40888390	+	3'-UTR	5.15565	33.95809	K562	YBX3
chr1	40888338	40888360	+	3'-UTR	4.91832	29.67487	K562	YBX3
chr1	40888559	40888635	+	3'-UTR	3.74276	26.17137	K562	EIF4G2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 84 entries

eCLIP assay for SMAP2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SMAP2 is not available on ENCORE database.
117 RBPs can affect the levels of SMAP2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SMAP2 is not available on ENCORE database.

117 RBPs can affect the gene expression of SMAP2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SMAP2	ENSG00000084070.7	3147.54400	7258.79620	-1.20550	84.13720	81.23460	K562	UPF1
SMAP2	ENSG00000084070.7	806.34980	1798.44040	-1.15730	41.23740	39.88670	HepG2	SRSF1
SMAP2	ENSG00000084070.7	530.50700	1317.68090	-1.31260	40.82810	38.81530	HepG2	SRSF5
SMAP2	ENSG00000084070.7	909.05220	1841.79390	-1.01870	31.20480	29.80550	HepG2	NELFE
SMAP2	ENSG00000084070.7	585.25360	1335.97910	-1.19080	30.53950	29.18470	HepG2	RBM22
SMAP2	ENSG00000084070.7	762.48590	1616.56700	-1.08420	29.82070	28.23880	HepG2	TAF15
SMAP2	ENSG00000084070.7	918.21910	1722.98110	-0.90800	25.32340	23.84200	HepG2	SF3B4
SMAP2	ENSG00000084070.7	811.35420	1498.52270	-0.88510	25.36170	23.78840	HepG2	SUCLG1
SMAP2	ENSG00000084070.7	793.10080	1463.14520	-0.88350	24.29000	22.95650	HepG2	SRSF9
SMAP2	ENSG00000084070.7	824.04430	1508.95210	-0.87280	23.49660	22.40870	HepG2	SRFBP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 145 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SMAP2 is not available on ENCORE database.

6 RBPs can affect the splicing of SMAP2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SMAP2	ENSG00000084070.7	chr1	+	40869355	40869418			40839368	40839895	40872407	40872541	0.07400	0.00000	0.00005	included	K562	TARDBP
A5SS	SMAP2	ENSG00000084070.7	chr1	+	40875428	40875638			40875428	40875507	40878687	40878774	0.05200	0.00000	0.00000	longer	K562	AQR
MXE	SMAP2	ENSG00000084070.7	chr1	+	40878687	40878774	40879830	40879912	40875428	40875507	40880943	40881053	-0.13600	0.00001	0.00106	2included	K562	HNRNPUL1
SE	SMAP2	ENSG00000084070.7	chr1	+	40869355	40869418			40841418	40841488	40872407	40872541	-0.47800	0.00073	0.08980	excluded	K562	ZC3H8
MXE	SMAP2	ENSG00000084070.7	chr1	+	40841418	40841488	40869355	40869418	40839368	40839895	40872407	40872541	0.29700	0.00295	0.04801	1included	K562	HNRNPC
MXE	SMAP2	ENSG00000084070.7	chr1	+	40841418	40841488	40869355	40869418	40840319	40840380	40872407	40872541	0.29100	0.00403	0.05940	1included	K562	HNRNPC
SE	SMAP2	ENSG00000084070.7	chr1	+	40872407	40872627			40839368	40839895	40874324	40874410	-0.05100	0.00630	0.05626	excluded	K562	AQR
MXE	SMAP2	ENSG00000084070.7	chr1	+	40848194	40848296	40869355	40869418	40840319	40840380	40872407	40872541	0.06600	0.00791	0.07418	1included	K562	DROSHA
MXE	SMAP2	ENSG00000084070.7	chr1	+	40841418	40841488	40869355	40869418	40839368	40839895	40872407	40872541	0.47900	0.00883	0.05725	1included	K562	AQR
MXE	SMAP2	ENSG00000084070.7	chr1	+	40848194	40848296	40869355	40869418	40839368	40839895	40872407	40872541	0.16400	0.01062	0.06645	1included	K562	AQR

Showing 1 to 10 of 10 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SMAP2

General Information

Functions

Localization

Domains (AlphaFold: SMAP2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SMAP2 is not avaliable on ENCORE database.

40 proteins are bound to SMAP2 RNA:

eCLIP assay for SMAP2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SMAP2 is not available on ENCORE database.

117 RBPs can affect the gene expression of SMAP2 :

The Knockdown/knockout RNA-Seq assay for SMAP2 is not available on ENCORE database.

6 RBPs can affect the splicing of SMAP2 :

The Knockdown/knockout RNA-Seq assay for SMAP2 is not avaliable on ENCORE database.