SF3A2

General Information

Gene Name : SF3A2
Gene ID : ENSG00000104897.9
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SF3A2)

Not Available

Antibody Validation

Bethyl Labs: A304-821A

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SF3A2	ENSG00000104897.9	1.52	18.30	9.91	ENCSR000AEF
HepG2	SF3A2	ENSG00000104897.9	35.42	9.08	22.25	ENCSR985KAT
K562	SF3A2	ENSG00000104897.9	86.25	30.01	58.13	ENCSR000AEO

Assays

2 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
knockdown followed by RNA-seq	SF3A2-BGKcLV21-K562	ENCSR095TFW	SF3A2	K562	Released		ENCSR854OFV	CRISPR	KD% = 55.6,66.3
knockdown followed by RNA-seq	SF3A2-BGHcLV24-HepG2	ENCSR402BZZ	SF3A2	HepG2	Released		ENCSR671FDZ	CRISPR	KD% = 55.0,52.0

eCLIP

No eCLIP experiment available

Antibody Validation

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
SF3A2	ENCAB309KDW	A304-821A	1				BGHcLV24-47, Released, ENCODE4	BGKcLV21-41, NotSatisfied, ENCODE4

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project
SF3A2	K562	CRISPR	ENCSR095TFW	ENCSR854OFV	SF3A2-BGKcLV21-41,SF3A2-BGKcLV21-42	NT-BGKcLV21-1,NT-BGKcLV21-2	55.6,66.3	Released	ENCODE4
SF3A2	HepG2	CRISPR			BGHcLV22-51,BGHcLV22-52	BGHcLV22-1,BGHcLV22-2	35.3,28.3	NotSatisfied	ENCODE4
SF3A2	HepG2	CRISPR	ENCSR402BZZ	ENCSR671FDZ	SF3A2-BGHcLV24-47,SF3A2-BGHcLV24-48	NT-BGHcLV24-1,NT-BGHcLV24-2	55.0,52.0	Released	ENCODE4

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
SF3A2	Product_ID: A304-821A Lot_ID: 1 Source: Bethyl Labs Target Name: SF3A2-human

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SF3A2 is not avaliable on ENCORE database.

Proteins bound to RNA

SF3A2 RNA is bound by 28 proteins.

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eCLIP assay for SF3A2 is not avaliable on ENCORE database.

28 proteins are bound to SF3A2 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	2248365	2248504	+	CDS	5.85522	400.00000	K562	PCBP1
chr19	2248030	2248153	+	CDS	4.63614	75.61982	K562	PCBP1
chr19	2245557	2245597	+	intron-Proximal	6.28365	59.35188	K562	AQR
chr19	2245553	2245557	+	CDS,intron-Proximal	4.55675	49.36336	K562	AQR
chr19	2248222	2248294	+	CDS	5.78692	45.16242	K562	PCBP1
chr19	2248294	2248365	+	CDS	5.07654	43.75855	K562	PCBP1
chr19	2248538	2248625	+	3'-UTR,CDS	5.35424	40.07804	K562	HNRNPK
chr19	2248235	2248304	+	CDS	5.22779	37.99559	K562	HNRNPK
chr19	2248149	2248235	+	CDS	4.60245	37.69506	K562	HNRNPK
chr19	2248351	2248456	+	CDS	3.70679	37.25438	K562	DROSHA
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 107 entries

eCLIP assay for SF3A2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SF3A2 is not available on ENCORE database.
113 RBPs can affect the levels of SF3A2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SF3A2 is not available on ENCORE database.

113 RBPs can affect the gene expression of SF3A2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SF3A2	ENSG00000104897.5	6630.52390	4062.53430	0.70660	27.94020	26.23680	K562	AGGF1
SF3A2	ENSG00000104897.5	2658.67010	1268.81600	1.06710	26.67000	22.97600	K562	SRSF4
SF3A2	ENSG00000104897.5	1908.12650	894.72240	1.09250	25.33820	22.58400	K562	BCLAF1
SF3A2	ENSG00000104897.5	655.78360	287.89000	1.18760	23.03990	21.42200	HepG2	HNRNPU
SF3A2	ENSG00000104897.5	638.14960	282.24060	1.17690	22.14890	20.74670	HepG2	TRIM56
SF3A2	ENSG00000104897.5	569.27400	255.80120	1.15400	21.75720	20.08540	HepG2	DNAJC2
SF3A2	ENSG00000104897.5	1524.51400	678.78060	1.16720	18.75140	15.76680	K562	CSTF2
SF3A2	ENSG00000104897.5	872.30200	446.93310	0.96470	16.76550	14.98190	HepG2	NOL12
SF3A2	ENSG00000104897.5	1789.77310	711.67090	1.33040	16.88680	14.72540	K562	TIA1
SF3A2	ENSG00000104897.5	644.34870	256.37620	1.32950	15.29100	13.95960	HepG2	SAFB2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 124 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SF3A2 is not available on ENCORE database.

11 RBPs can affect the splicing of SF3A2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
RI	SF3A2	ENSG00000104897.5	chr19	+	2246751	2247021	2246751	2246801	2246880	2247021	0.12800	0.00000	0.00000	included	K562	AQR
RI	SF3A2	ENSG00000104897.5	chr19	+	2246751	2247021	2246751	2246801	2246880	2247021	0.11000	0.00004	0.00097	included	HepG2	SF3A3
RI	SF3A2	ENSG00000104897.5	chr19	+	2246751	2247021	2246751	2246801	2246880	2247021	0.15500	0.00013	0.00575	included	HepG2	UCHL5
RI	SF3A2	ENSG00000104897.5	chr19	+	2246751	2247021	2246751	2246801	2246880	2247021	0.15600	0.00018	0.00731	included	HepG2	FTO
RI	SF3A2	ENSG00000104897.5	chr19	+	2246751	2247021	2246751	2246801	2246880	2247021	-0.05400	0.00023	0.06629	excluded	K562	PUM2
RI	SF3A2	ENSG00000104897.5	chr19	+	2246751	2247021	2246751	2246801	2246880	2247021	0.07300	0.00036	0.00459	included	K562	AKAP8L
RI	SF3A2	ENSG00000104897.5	chr19	+	2246751	2247021	2246751	2246801	2246880	2247021	0.07200	0.00588	0.09502	included	HepG2	PTBP1
RI	SF3A2	ENSG00000104897.5	chr19	+	2246751	2247021	2246751	2246801	2246880	2247021	0.06000	0.00798	0.07220	included	HepG2	NCBP2
RI	SF3A2	ENSG00000104897.5	chr19	+	2246751	2247021	2246751	2246801	2246880	2247021	0.05800	0.00815	0.06862	included	K562	EFTUD2
RI	SF3A2	ENSG00000104897.5	chr19	+	2246751	2247021	2246751	2246801	2246880	2247021	0.05900	0.00970	0.09272	included	K562	PRPF8

Showing 1 to 10 of 11 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SF3A2

General Information

Functions

Localization

Domains (AlphaFold: SF3A2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SF3A2 is not avaliable on ENCORE database.

28 proteins are bound to SF3A2 RNA:

eCLIP assay for SF3A2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SF3A2 is not available on ENCORE database.

113 RBPs can affect the gene expression of SF3A2 :

The Knockdown/knockout RNA-Seq assay for SF3A2 is not available on ENCORE database.

11 RBPs can affect the splicing of SF3A2 :

The Knockdown/knockout RNA-Seq assay for SF3A2 is not avaliable on ENCORE database.