SDF4

General Information

Gene Name : SDF4
Gene ID : ENSG00000078808.16
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SDF4)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SDF4	ENSG00000078808.16	3.73	18.54	11.13	ENCSR000AEF
HepG2	SDF4	ENSG00000078808.16	170.63	67.02	118.82	ENCSR985KAT
K562	SDF4	ENSG00000078808.16	63.65	44.40	54.02	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SDF4 is not avaliable on ENCORE database.

Proteins bound to RNA

SDF4 RNA is bound by 55 proteins.

CanvasJS.com

eCLIP assay for SDF4 is not avaliable on ENCORE database.

55 proteins are bound to SDF4 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	1167286	1167318	-	5'-UTR,intron-Distal	5.89311	400.00000	HepG2	DDX3X
chr1	1164260	1164327	-	5'-UTR,intron-Distal,intron-Proximal	5.58936	400.00000	HepG2	DDX3X
chr1	1164075	1164130	-	CDS,intron-Distal,intron-Proximal	4.76311	82.66702	HepG2	DDX3X
chr1	1167270	1167286	-	5'-UTR,intron-Distal	5.12059	72.55705	HepG2	DDX3X
chr1	1167318	1167357	-	5'-UTR,intron-Distal,intron-Proximal	6.63685	64.82073	HepG2	DDX3X
chr1	1158243	1158353	-	intron-Distal	7.64038	59.66531	K562	TARDBP
chr1	1164130	1164180	-	5'-UTR,CDS,intron-Distal	4.56153	52.42143	HepG2	DDX3X
chr1	1158268	1158372	-	intron-Distal	6.49383	46.18325	K562	EIF4G2
chr1	1158134	1158209	-	intron-Distal	4.99599	43.78616	K562	EIF4G2
chr1	1158353	1158398	-	intron-Distal	6.20185	43.24418	K562	TARDBP
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 313 entries

eCLIP assay for SDF4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SDF4 is not available on ENCORE database.
107 RBPs can affect the levels of SDF4.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SDF4 is not available on ENCORE database.

107 RBPs can affect the gene expression of SDF4 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SDF4	ENSG00000078808.12	3483.10400	1534.12440	1.18290	54.09170	52.01800	HepG2	TRIM56
SDF4	ENSG00000078808.12	4180.11130	2546.22680	0.71510	33.46790	31.57880	HepG2	SLBP
SDF4	ENSG00000078808.12	4451.33950	2818.85300	0.65900	31.85540	30.29290	HepG2	PUM1
SDF4	ENSG00000078808.12	2188.87670	1079.01580	1.02040	24.28400	22.17960	K562	SRSF1
SDF4	ENSG00000078808.12	3686.20180	2555.22380	0.52860	19.03300	17.41500	HepG2	HNRNPL
SDF4	ENSG00000078808.12	2373.91650	3551.20390	-0.58100	17.22460	16.25840	HepG2	SRSF1
SDF4	ENSG00000078808.12	1527.06990	3440.58250	-1.17190	17.71080	16.12610	HepG2	MAGOH
SDF4	ENSG00000078808.12	2953.67230	4182.61270	-0.50190	15.62340	14.68740	HepG2	SRFBP1
SDF4	ENSG00000078808.12	2736.47870	1624.96450	0.75180	16.02410	14.66900	HepG2	SMN1
SDF4	ENSG00000078808.12	2171.41020	1053.27990	1.04360	15.89080	13.80540	K562	TIA1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 123 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SDF4 is not available on ENCORE database.

4 RBPs can affect the splicing of SDF4 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	SDF4	ENSG00000078808.12	chr1	-	1154180	1154385	1154180	1154307	1158623	1158796	0.16000	0.00000	0.00000	longer	K562	AQR
A3SS	SDF4	ENSG00000078808.12	chr1	-	1154148	1154385	1154148	1154302	1158623	1158737	-0.08500	0.00004	0.03332	shorter	K562	PPIL4
SE	SDF4	ENSG00000078808.12	chr1	-	1154148	1154307	1153837	1154013	1158623	1158737	-0.05700	0.00006	0.00375	excluded	K562	PRPF8
A3SS	SDF4	ENSG00000078808.12	chr1	-	1154148	1154385	1154148	1154302	1158623	1158796	-0.05600	0.00025	0.00202	shorter	K562	AQR
A3SS	SDF4	ENSG00000078808.12	chr1	-	1154148	1154385	1154148	1154307	1158623	1158737	0.07500	0.00079	0.04405	longer	K562	SF3B4

Showing 1 to 5 of 5 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SDF4

General Information

Functions

Localization

Domains (AlphaFold: SDF4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SDF4 is not avaliable on ENCORE database.

55 proteins are bound to SDF4 RNA:

eCLIP assay for SDF4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SDF4 is not available on ENCORE database.

107 RBPs can affect the gene expression of SDF4 :

The Knockdown/knockout RNA-Seq assay for SDF4 is not available on ENCORE database.

4 RBPs can affect the splicing of SDF4 :

The Knockdown/knockout RNA-Seq assay for SDF4 is not avaliable on ENCORE database.