SCOC

General Information

Gene Name : SCOC
Gene ID : ENSG00000153130.17
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SCOC)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SCOC	ENSG00000153130.17	52.11	38.91	45.51	ENCSR000AEF
HepG2	SCOC	ENSG00000153130.17	23.32	71.65	47.48	ENCSR985KAT
K562	SCOC	ENSG00000153130.17	25.33	31.43	28.38	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SCOC is not avaliable on ENCORE database.

Proteins bound to RNA

SCOC RNA is bound by 7 proteins.

CanvasJS.com

eCLIP assay for SCOC is not avaliable on ENCORE database.

7 proteins are bound to SCOC RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr4	141294806	141294874	+	5'-UTR,CDS,intron-Distal,intron-Proximal	7.04883	20.44642	K562	DDX3X
chr4	141302464	141302544	+	3'-UTR	5.48263	17.11424	HepG2	FUBP3
chr4	141302544	141302613	+	3'-UTR	4.23479	14.92296	HepG2	FUBP3
chr4	141300274	141300298	+	3'-UTR,CDS,intron-Proximal	5.34335	10.95413	K562	DDX3X
chr4	141294792	141294871	+	5'-UTR,CDS,intron-Distal,intron-Proximal	4.05839	9.39478	HepG2	DDX3X
chr4	141303141	141303272	+	3'-UTR	3.41090	8.55824	K562	UPF1
chr4	141300298	141300347	+	3'-UTR,CDS,intron-Proximal	3.69991	8.21085	K562	DDX3X
chr4	141303547	141303611	+	3'-UTR	4.40150	7.77386	HepG2	FUBP3
chr4	141302115	141302163	+	CDS,intron-Proximal	3.54651	5.73361	K562	YBX3
chr4	141303002	141303073	+	3'-UTR	4.09260	5.53175	K562	FAM120A
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 13 entries

eCLIP assay for SCOC is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SCOC is not available on ENCORE database.
110 RBPs can affect the levels of SCOC.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SCOC is not available on ENCORE database.

110 RBPs can affect the gene expression of SCOC :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SCOC	ENSG00000153130.13	1679.35780	3946.34400	-1.23260	31.14250	29.74600	HepG2	NELFE
SCOC	ENSG00000153130.13	1547.93960	2617.07800	-0.75760	23.62460	21.69200	HepG2	EIF4G1
SCOC	ENSG00000153130.13	2004.41590	891.95770	1.16800	18.81180	17.42800	K562	PUS1
SCOC	ENSG00000153130.13	310.41680	688.96850	-1.15020	15.97130	14.61520	K562	HNRNPC
SCOC	ENSG00000153130.13	2152.13850	3545.85520	-0.72040	15.62040	14.52310	HepG2	PTBP1
SCOC	ENSG00000153130.13	1904.38550	2819.72260	-0.56620	15.79160	14.50290	HepG2	SUCLG1
SCOC	ENSG00000153130.13	347.76050	917.40150	-1.39950	15.96960	13.52310	K562	UCHL5
SCOC	ENSG00000153130.13	1858.52890	3182.72310	-0.77610	14.68400	12.79500	HepG2	TIA1
SCOC	ENSG00000153130.13	328.80560	1012.29830	-1.62230	14.24510	12.55580	HepG2	UCHL5
SCOC	ENSG00000153130.13	473.54290	1065.02900	-1.16930	12.80560	11.65850	HepG2	UTP3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 134 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SCOC is not available on ENCORE database.

10 RBPs can affect the splicing of SCOC :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SCOC	ENSG00000153130.13	chr4	+	141300722	141300806	141300274	141300346	141302115	141306880	-0.47000	0.00000	0.00000	excluded	K562	SRSF1
SE	SCOC	ENSG00000153130.13	chr4	+	141300722	141300806	141300274	141300346	141302115	141306880	-0.08900	0.00000	0.00067	excluded	HepG2	RBM22
SE	SCOC	ENSG00000153130.13	chr4	+	141300722	141300806	141300274	141300346	141302115	141306880	-0.12900	0.00000	0.00008	excluded	K562	PUS1
SE	SCOC	ENSG00000153130.13	chr4	+	141300722	141300806	141300274	141300346	141302115	141306880	-0.13900	0.00000	0.00003	excluded	K562	U2AF1
SE	SCOC	ENSG00000153130.13	chr4	+	141300722	141300806	141300274	141300346	141302115	141306880	-0.44100	0.00000	0.00000	excluded	HepG2	SRSF1
SE	SCOC	ENSG00000153130.13	chr4	+	141300722	141300806	141300274	141300346	141302115	141306880	0.06600	0.00001	0.00205	included	HepG2	SUPV3L1
SE	SCOC	ENSG00000153130.13	chr4	+	141300722	141300806	141300274	141300346	141302115	141306880	-0.10600	0.00004	0.00121	excluded	K562	U2AF2
SE	SCOC	ENSG00000153130.13	chr4	+	141300722	141300806	141300274	141300346	141302115	141306880	-0.07900	0.00008	0.02136	excluded	K562	EIF3G
SE	SCOC	ENSG00000153130.13	chr4	+	141300722	141300806	141300274	141300346	141302115	141306880	-0.20100	0.00072	0.01064	excluded	HepG2	U2AF2
SE	SCOC	ENSG00000153130.13	chr4	+	141300722	141300806	141300274	141300346	141302115	141306880	-0.09500	0.00074	0.02985	excluded	K562	PRPF8

Showing 1 to 10 of 12 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SCOC

General Information

Functions

Localization

Domains (AlphaFold: SCOC)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SCOC is not avaliable on ENCORE database.

7 proteins are bound to SCOC RNA:

eCLIP assay for SCOC is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SCOC is not available on ENCORE database.

110 RBPs can affect the gene expression of SCOC :

The Knockdown/knockout RNA-Seq assay for SCOC is not available on ENCORE database.

10 RBPs can affect the splicing of SCOC :

The Knockdown/knockout RNA-Seq assay for SCOC is not avaliable on ENCORE database.