RRP12

General Information

Gene Name : RRP12
Gene ID : ENSG00000052749.13
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RRP12)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RRP12	ENSG00000052749.13	3.23	11.21	7.22	ENCSR000AEF
HepG2	RRP12	ENSG00000052749.13	26.90	13.67	20.29	ENCSR985KAT
K562	RRP12	ENSG00000052749.13	27.08	20.28	23.68	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RRP12 is not avaliable on ENCORE database.

Proteins bound to RNA

RRP12 RNA is bound by 13 proteins.

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eCLIP assay for RRP12 is not avaliable on ENCORE database.

13 proteins are bound to RRP12 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr10	99132703	99132785	-	intron-Distal,intron-Proximal	6.84025	23.91975	K562	AQR
chr10	99132544	99132596	-	CDS,intron-Distal,intron-Proximal	6.02731	13.68711	K562	AQR
chr10	99132785	99132803	-	intron-Distal,intron-Proximal	5.91611	12.10660	K562	AQR
chr10	99132724	99132785	-	intron-Distal,intron-Proximal	3.87391	11.40635	HepG2	PRPF8
chr10	99131639	99131781	-	intron-Distal,intron-Proximal	5.94563	11.05222	HepG2	EFTUD2
chr10	99132785	99132803	-	intron-Distal,intron-Proximal	4.46465	8.77485	HepG2	PRPF8
chr10	99132756	99132790	-	intron-Distal,intron-Proximal	4.46878	8.64310	HepG2	AQR
chr10	99139000	99139075	-	CDS,intron-Distal,intron-Proximal	5.10770	8.26505	HepG2	PRPF8
chr10	99126224	99126330	-	CDS,intron-Distal,intron-Proximal	3.36745	8.21513	K562	ZNF800
chr10	99150296	99150348	-	intron-Distal,intron-Proximal	4.92075	7.97588	HepG2	SF3B4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 42 entries

eCLIP assay for RRP12 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RRP12 is not available on ENCORE database.
97 RBPs can affect the levels of RRP12.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RRP12 is not available on ENCORE database.

97 RBPs can affect the gene expression of RRP12 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RRP12	ENSG00000052749.9	1603.79330	732.23850	1.13100	38.14260	36.29450	HepG2	UTP3
RRP12	ENSG00000052749.9	2817.59350	1471.84500	0.93670	34.27410	32.25520	K562	DDX47
RRP12	ENSG00000052749.9	2317.57470	806.53260	1.52270	30.08320	28.18080	HepG2	MATR3
RRP12	ENSG00000052749.9	1087.08080	449.91990	1.27260	28.03210	25.46890	K562	EIF3G
RRP12	ENSG00000052749.9	1410.33190	682.59780	1.04680	26.94490	25.17960	K562	FXR1
RRP12	ENSG00000052749.9	2305.61860	1162.17190	0.98820	25.37920	24.13030	HepG2	RBM22
RRP12	ENSG00000052749.9	1333.42390	707.77880	0.91370	23.97890	22.39870	HepG2	SRSF5
RRP12	ENSG00000052749.9	1679.42140	768.62140	1.12750	22.49030	21.04430	HepG2	BOP1
RRP12	ENSG00000052749.9	1383.21450	804.89480	0.78110	20.58700	19.14020	HepG2	SUCLG1
RRP12	ENSG00000052749.9	1619.83000	760.94880	1.08990	15.62430	14.45180	HepG2	PUM1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 108 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RRP12 is not available on ENCORE database.

4 RBPs can affect the splicing of RRP12 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	RRP12	ENSG00000052749.9	chr10	-	99118293	99118402	99118293	99118376	99118699	99118767	0.10400	0.00000	0.00000	longer	K562	AQR
RI	RRP12	ENSG00000052749.9	chr10	-	99118293	99118767	99118293	99118376	99118699	99118767	0.07800	0.00000	0.00000	included	K562	AQR
RI	RRP12	ENSG00000052749.9	chr10	-	99130679	99131923	99130679	99130838	99131829	99131923	0.20600	0.00000	0.00000	included	K562	AQR
RI	RRP12	ENSG00000052749.9	chr10	-	99130679	99131923	99130679	99130838	99131829	99131923	0.14400	0.00006	0.00093	included	K562	AKAP8L
SE	RRP12	ENSG00000052749.9	chr10	-	99126797	99126889	99126498	99126666	99129181	99129339	-0.12700	0.00012	0.00204	excluded	K562	AQR
RI	RRP12	ENSG00000052749.9	chr10	-	99118293	99118767	99118293	99118376	99118699	99118767	0.13300	0.00053	0.01323	included	K562	U2AF1
A3SS	RRP12	ENSG00000052749.9	chr10	-	99132492	99132663	99132492	99132560	99132802	99132957	0.12800	0.00086	0.00610	longer	K562	AQR
RI	RRP12	ENSG00000052749.9	chr10	-	99130679	99131923	99130679	99130838	99131829	99131923	0.13400	0.00115	0.00842	included	K562	PUS1
A3SS	RRP12	ENSG00000052749.9	chr10	-	99129923	99130085	99129923	99130031	99130211	99130317	0.09200	0.00126	0.00855	longer	K562	AQR
A3SS	RRP12	ENSG00000052749.9	chr10	-	99131829	99131960	99131829	99131923	99132492	99132663	0.08100	0.00212	0.01354	longer	K562	AQR

Showing 1 to 10 of 10 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RRP12

General Information

Functions

Localization

Domains (AlphaFold: RRP12)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RRP12 is not avaliable on ENCORE database.

13 proteins are bound to RRP12 RNA:

eCLIP assay for RRP12 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RRP12 is not available on ENCORE database.

97 RBPs can affect the gene expression of RRP12 :

The Knockdown/knockout RNA-Seq assay for RRP12 is not available on ENCORE database.

4 RBPs can affect the splicing of RRP12 :

The Knockdown/knockout RNA-Seq assay for RRP12 is not avaliable on ENCORE database.