PDGFB

General Information

Gene Name : PDGFB
Gene ID : ENSG00000100311.16
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PDGFB)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PDGFB	ENSG00000100311.16	0.18	0.39	0.29	ENCSR000AEF
HepG2	PDGFB	ENSG00000100311.16	2.69	1.06	1.88	ENCSR985KAT
K562	PDGFB	ENSG00000100311.16	0.64	0.27	0.46	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PDGFB is not avaliable on ENCORE database.

Proteins bound to RNA

PDGFB RNA is bound by 1 proteins.

CanvasJS.com

eCLIP assay for PDGFB is not avaliable on ENCORE database.

1 proteins are bound to PDGFB RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr22	39639097	39639216	-	intron-Distal,intron-Proximal	4.04736	6.23207	HepG2	NKRF
chr22	39637313	39637381	-	intron-Distal	3.92170	3.42782	HepG2	NKRF
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 2 of 2 entries

eCLIP assay for PDGFB is not avaliable on ENCORE database.

Summary
DE Affected by

Diffrential Expression

The Knockdown/knockout assay for PDGFB is not available on ENCORE database.
126 RBPs can affect the levels of PDGFB.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PDGFB is not available on ENCORE database.

126 RBPs can affect the gene expression of PDGFB :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PDGFB	ENSG00000100311.12	2843.63260	590.32320	2.26810	71.83270	69.27730	HepG2	EIF2S1
PDGFB	ENSG00000100311.12	905.03220	181.88980	2.31480	47.27790	45.05980	HepG2	AUH
PDGFB	ENSG00000100311.12	655.43040	181.21430	1.85460	42.59110	40.26980	HepG2	DNAJC21
PDGFB	ENSG00000100311.12	661.66940	258.50110	1.35580	29.86040	27.91740	HepG2	DAZAP1
PDGFB	ENSG00000100311.12	959.62220	379.66110	1.33770	28.91100	26.65690	HepG2	RBM15
PDGFB	ENSG00000100311.12	110.35870	739.35240	-2.74410	29.17400	26.28700	HepG2	TBRG4
PDGFB	ENSG00000100311.12	624.74860	105.83330	2.56140	24.29350	22.36060	HepG2	DDX55
PDGFB	ENSG00000100311.12	672.06470	244.66130	1.45770	20.71190	18.77770	HepG2	MSI2
PDGFB	ENSG00000100311.12	631.47320	259.53430	1.28270	19.64010	17.94570	HepG2	PUM2
PDGFB	ENSG00000100311.12	701.34430	172.83510	2.02060	19.54950	16.79110	HepG2	SUB1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 143 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PDGFB

General Information

Functions

Localization

Domains (AlphaFold: PDGFB)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PDGFB is not avaliable on ENCORE database.

1 proteins are bound to PDGFB RNA:

eCLIP assay for PDGFB is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PDGFB is not available on ENCORE database.

126 RBPs can affect the gene expression of PDGFB :

The Knockdown/knockout RNA-Seq assay for PDGFB is not available on ENCORE database.

No RBPs affect the alternative splcing events of PDGFB on ENCORE database.

The Knockdown/knockout RNA-Seq assay for PDGFB is not avaliable on ENCORE database.