MBD6

General Information

Gene Name : MBD6
Gene ID : ENSG00000166987.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: MBD6)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	MBD6	ENSG00000166987.14	3.70	8.64	6.17	ENCSR000AEF
HepG2	MBD6	ENSG00000166987.14	13.64	10.36	12.00	ENCSR985KAT
K562	MBD6	ENSG00000166987.14	14.66	9.46	12.06	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for MBD6 is not avaliable on ENCORE database.

Proteins bound to RNA

MBD6 RNA is bound by 26 proteins.

CanvasJS.com

eCLIP assay for MBD6 is not avaliable on ENCORE database.

26 proteins are bound to MBD6 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	57920051	57920147	+	CDS,intron-Proximal	4.94878	40.01027	HepG2	DDX59
chr12	57919942	57920020	+	CDS,intron-Distal,intron-Proximal	4.57840	39.39045	HepG2	DDX59
chr12	57919682	57919770	+	CDS,intron-Distal	4.17534	32.75161	HepG2	DDX59
chr12	57919812	57919921	+	CDS,intron-Distal	6.69677	30.56687	K562	HNRNPK
chr12	57919887	57920022	+	CDS,intron-Distal,intron-Proximal	4.71844	30.37229	HepG2	HNRNPK
chr12	57919276	57919339	+	CDS,intron-Distal	4.72793	28.86003	HepG2	DDX59
chr12	57919339	57919405	+	CDS,intron-Distal	4.45032	27.60007	HepG2	DDX59
chr12	57919576	57919616	+	CDS,intron-Distal	4.84065	26.82559	HepG2	DDX59
chr12	57921577	57921647	+	CDS,intron-Proximal	4.98564	23.15465	K562	SF3B4
chr12	57919346	57919427	+	CDS,intron-Distal	5.45698	22.98528	K562	HNRNPK
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 117 entries

eCLIP assay for MBD6 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for MBD6 is not available on ENCORE database.
111 RBPs can affect the levels of MBD6.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for MBD6 is not available on ENCORE database.

111 RBPs can affect the gene expression of MBD6 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
MBD6	ENSG00000166987.10	2690.39410	881.69170	1.60940	56.13330	53.62600	K562	HNRNPC
MBD6	ENSG00000166987.10	3026.94640	1147.76140	1.39890	38.27460	36.29850	K562	AQR
MBD6	ENSG00000166987.10	1610.28920	709.05820	1.18320	23.12430	21.28410	HepG2	RBM25
MBD6	ENSG00000166987.10	1774.66870	807.81660	1.13530	23.99410	20.77460	K562	TRIM56
MBD6	ENSG00000166987.10	1951.45800	1085.28280	0.84640	22.11480	20.38160	K562	EIF2S2
MBD6	ENSG00000166987.10	2522.10520	1487.05840	0.76210	21.32660	19.92450	HepG2	ETF1
MBD6	ENSG00000166987.10	3083.29440	1529.75870	1.01110	21.18580	19.43550	HepG2	SF3B1
MBD6	ENSG00000166987.10	1677.71960	790.53520	1.08550	21.66070	18.71510	K562	PSIP1
MBD6	ENSG00000166987.10	1483.13960	720.75610	1.04100	19.52220	18.06260	HepG2	HNRNPA1
MBD6	ENSG00000166987.10	958.58260	473.49680	1.01740	17.36480	15.16120	K562	TIA1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 142 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for MBD6 is not available on ENCORE database.

13 RBPs can affect the splicing of MBD6 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
RI	MBD6	ENSG00000166987.10	chr12	+	57917811	57918199	57917811	57917875	57918062	57918199	0.19500	0.00000	0.00000	included	K562	PUS1
RI	MBD6	ENSG00000166987.10	chr12	+	57917811	57918199	57917811	57917875	57918062	57918199	0.30800	0.00000	0.00002	included	K562	PRPF8
RI	MBD6	ENSG00000166987.10	chr12	+	57917811	57918199	57917811	57917875	57918062	57918199	0.18700	0.00000	0.00003	included	K562	RBM15
RI	MBD6	ENSG00000166987.10	chr12	+	57917811	57918199	57917811	57917875	57918062	57918199	0.24400	0.00000	0.00003	included	K562	EFTUD2
RI	MBD6	ENSG00000166987.10	chr12	+	57917811	57918199	57917811	57917875	57918062	57918199	0.25100	0.00000	0.00000	included	K562	AQR
RI	MBD6	ENSG00000166987.10	chr12	+	57917811	57918199	57917811	57917875	57918062	57918199	0.14700	0.00001	0.00016	included	K562	AKAP8L
A3SS	MBD6	ENSG00000166987.10	chr12	+	57922651	57922792	57922728	57922792	57922448	57922501	0.09500	0.00006	0.01109	longer	HepG2	PCBP1
RI	MBD6	ENSG00000166987.10	chr12	+	57917811	57918199	57917811	57917875	57918062	57918199	0.10700	0.00008	0.00144	included	K562	AGGF1
A3SS	MBD6	ENSG00000166987.10	chr12	+	57922651	57922792	57922728	57922792	57922448	57922501	0.13800	0.00039	0.02469	longer	K562	SF3B4
A3SS	MBD6	ENSG00000166987.10	chr12	+	57922433	57922501	57922448	57922501	57921929	57922343	0.08600	0.00052	0.00385	longer	K562	AQR

Showing 1 to 10 of 19 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

MBD6

General Information

Functions

Localization

Domains (AlphaFold: MBD6)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for MBD6 is not avaliable on ENCORE database.

26 proteins are bound to MBD6 RNA:

eCLIP assay for MBD6 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for MBD6 is not available on ENCORE database.

111 RBPs can affect the gene expression of MBD6 :

The Knockdown/knockout RNA-Seq assay for MBD6 is not available on ENCORE database.

13 RBPs can affect the splicing of MBD6 :

The Knockdown/knockout RNA-Seq assay for MBD6 is not avaliable on ENCORE database.