FNBP4

General Information

Gene Name : FNBP4
Gene ID : ENSG00000109920.12
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: FNBP4)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	FNBP4	ENSG00000109920.12	96.86	94.10	95.48	ENCSR000AEF
HepG2	FNBP4	ENSG00000109920.12	45.58	62.55	54.06	ENCSR985KAT
K562	FNBP4	ENSG00000109920.12	68.70	69.80	69.25	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for FNBP4 is not avaliable on ENCORE database.

Proteins bound to RNA

FNBP4 RNA is bound by 43 proteins.

CanvasJS.com

eCLIP assay for FNBP4 is not avaliable on ENCORE database.

43 proteins are bound to FNBP4 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	47753526	47753603	-	intron-Distal	4.49130	77.15673	HepG2	U2AF2
chr11	47788539	47788597	-	intron-Distal	6.03358	42.59656	K562	AQR
chr11	47765612	47765716	-	CDS,intron-Distal,intron-Proximal	4.07972	40.53783	K562	UCHL5
chr11	47788597	47788617	-	intron-Distal	5.54696	39.98468	K562	AQR
chr11	47753535	47753593	-	intron-Distal	6.63591	32.63582	K562	U2AF2
chr11	47753667	47753768	-	intron-Distal,intron-Proximal	4.04187	29.66748	K562	ZNF622
chr11	47772715	47772781	-	CDS,intron-Distal	5.25026	29.02232	HepG2	BCLAF1
chr11	47765623	47765716	-	CDS,intron-Distal,intron-Proximal	4.18311	28.25928	HepG2	BCLAF1
chr11	47753543	47753595	-	intron-Distal	5.13891	26.69617	K562	U2AF1
chr11	47765626	47765686	-	CDS,intron-Distal,intron-Proximal	3.97051	26.61037	K562	ZNF622
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 224 entries

eCLIP assay for FNBP4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for FNBP4 is not available on ENCORE database.
89 RBPs can affect the levels of FNBP4.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for FNBP4 is not available on ENCORE database.

89 RBPs can affect the gene expression of FNBP4 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
FNBP4	ENSG00000109920.8	3857.29040	1833.17790	1.07310	41.84130	40.00150	HepG2	TAF15
FNBP4	ENSG00000109920.8	1493.72320	2877.15700	-0.94570	21.64570	20.19030	HepG2	PUF60
FNBP4	ENSG00000109920.8	7727.38990	4052.53950	0.93110	21.32370	19.86870	K562	AQR
FNBP4	ENSG00000109920.8	3570.11140	1906.32700	0.90510	17.48860	15.89060	HepG2	HNRNPK
FNBP4	ENSG00000109920.8	1700.19490	2531.73500	-0.57440	15.82360	14.56250	HepG2	PUS1
FNBP4	ENSG00000109920.8	2122.42350	3216.47640	-0.59980	14.30510	13.31370	HepG2	RBM22
FNBP4	ENSG00000109920.8	2873.17200	1945.27700	0.56260	14.30300	13.07050	HepG2	RECQL
FNBP4	ENSG00000109920.8	3040.87100	1684.34160	0.85220	14.63930	12.75180	HepG2	TIA1
FNBP4	ENSG00000109920.8	2969.17330	1844.59170	0.68670	12.76400	11.37840	HepG2	RBM25
FNBP4	ENSG00000109920.8	1991.46870	2840.68870	-0.51240	12.10210	10.91990	HepG2	SRSF5
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 101 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for FNBP4 is not available on ENCORE database.

33 RBPs can affect the splicing of FNBP4 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	FNBP4	ENSG00000109920.8	chr11	-	47747288	47747388	47746023	47746330	47752925	47753113	0.39400	0.00000	included	K562	SRSF1
SE	FNBP4	ENSG00000109920.8	chr11	-	47747288	47747388	47746023	47746330	47752925	47753113	0.17900	0.00000	included	HepG2	ILF3
SE	FNBP4	ENSG00000109920.8	chr11	-	47747288	47747388	47746023	47746330	47752925	47753113	0.10800	0.00000	included	K562	FMR1
SE	FNBP4	ENSG00000109920.8	chr11	-	47747288	47747388	47746023	47746330	47752925	47753113	0.62600	0.00000	included	HepG2	HNRNPK
SE	FNBP4	ENSG00000109920.8	chr11	-	47747288	47747388	47746023	47746330	47752925	47753113	0.16400	0.00000	included	HepG2	TBRG4
SE	FNBP4	ENSG00000109920.8	chr11	-	47747288	47747388	47746023	47746330	47752925	47753113	-0.19100	0.00004	excluded	HepG2	U2AF2
SE	FNBP4	ENSG00000109920.8	chr11	-	47747288	47747388	47746023	47746330	47752925	47753113	0.08800	0.00018	included	K562	PHF6
SE	FNBP4	ENSG00000109920.8	chr11	-	47747288	47747388	47746023	47746330	47752925	47753113	0.08800	0.00001	included	K562	METAP2
SE	FNBP4	ENSG00000109920.8	chr11	-	47753668	47753800	47752835	47753113	47754088	47754222	0.29700	0.00000	included	K562	AQR
SE	FNBP4	ENSG00000109920.8	chr11	-	47747288	47747388	47746023	47746330	47752925	47753113	0.13200	0.00001	included	K562	MTPAP

Showing 1 to 10 of 43 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

FNBP4

General Information

Functions

Localization

Domains (AlphaFold: FNBP4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for FNBP4 is not avaliable on ENCORE database.

43 proteins are bound to FNBP4 RNA:

eCLIP assay for FNBP4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for FNBP4 is not available on ENCORE database.

89 RBPs can affect the gene expression of FNBP4 :

The Knockdown/knockout RNA-Seq assay for FNBP4 is not available on ENCORE database.

33 RBPs can affect the splicing of FNBP4 :

The Knockdown/knockout RNA-Seq assay for FNBP4 is not avaliable on ENCORE database.