DEPDC1B

General Information

Gene Name : DEPDC1B
Gene ID : ENSG00000035499.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: DEPDC1B)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	DEPDC1B	ENSG00000035499.12	29.28	28.53	28.91	ENCSR000AEF
HepG2	DEPDC1B	ENSG00000035499.12	27.37	47.53	37.45	ENCSR985KAT
K562	DEPDC1B	ENSG00000035499.12	34.36	35.72	35.04	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for DEPDC1B is not avaliable on ENCORE database.

Proteins bound to RNA

DEPDC1B RNA is bound by 21 proteins.

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eCLIP assay for DEPDC1B is not avaliable on ENCORE database.

21 proteins are bound to DEPDC1B RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	59897950	59898036	-	intron-Distal	6.14581	53.69902	HepG2	PCBP2
chr5	59995871	59995974	-	5'-UTR,CDS,intron-Distal,intron-Proximal	6.08414	26.75180	K562	DDX3X
chr5	59940571	59940645	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.75887	23.68348	K562	PUM2
chr5	59899175	59899259	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.54436	19.28365	HepG2	PRPF8
chr5	59976946	59977044	-	intron-Distal	5.26039	18.42033	K562	EXOSC5
chr5	59892963	59893105	-	3'-UTR,intron-Distal	4.59854	16.84735	HepG2	FUBP3
chr5	59897915	59897950	-	intron-Distal	4.87591	15.51526	HepG2	PCBP2
chr5	59975250	59975317	-	intron-Distal	6.02146	13.57230	K562	PTBP1
chr5	59982933	59983045	-	5'-UTR,CDS,intron-Distal	3.18132	12.47795	K562	DDX3X
chr5	59943220	59943303	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.59311	11.73537	HepG2	BCLAF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 65 entries

eCLIP assay for DEPDC1B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for DEPDC1B is not available on ENCORE database.
138 RBPs can affect the levels of DEPDC1B.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for DEPDC1B is not available on ENCORE database.

138 RBPs can affect the gene expression of DEPDC1B :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
DEPDC1B	ENSG00000035499.8	342.58440	1156.96270	-1.75580	63.96870	61.24220	K562	UPF1
DEPDC1B	ENSG00000035499.8	201.97890	779.31770	-1.94800	40.12120	38.62360	HepG2	TIAL1
DEPDC1B	ENSG00000035499.8	141.65150	700.23960	-2.30550	40.47610	38.40870	HepG2	EIF2S1
DEPDC1B	ENSG00000035499.8	184.88540	698.95160	-1.91860	37.24540	35.40980	HepG2	RPLP0
DEPDC1B	ENSG00000035499.8	185.72270	804.47130	-2.11490	36.19860	34.29550	HepG2	SUPV3L1
DEPDC1B	ENSG00000035499.8	226.56360	771.11190	-1.76700	34.85500	32.81740	K562	HNRNPC
DEPDC1B	ENSG00000035499.8	216.26920	615.20430	-1.50820	31.36770	29.54940	HepG2	UPF1
DEPDC1B	ENSG00000035499.8	566.57610	1348.13830	-1.25060	29.72560	27.68890	HepG2	PUM2
DEPDC1B	ENSG00000035499.8	279.23770	676.60710	-1.27680	28.94660	27.65720	HepG2	ZNF622
DEPDC1B	ENSG00000035499.8	144.58670	554.75630	-1.93990	29.02210	27.43370	HepG2	BOP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 167 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for DEPDC1B is not available on ENCORE database.

10 RBPs can affect the splicing of DEPDC1B :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	DEPDC1B	ENSG00000035499.8	chr5	-	59894901	59895087			59892738	59893741	59899217	59899394	-0.13300	0.00000	0.00009	excluded	K562	SRSF1
SE	DEPDC1B	ENSG00000035499.8	chr5	-	59894901	59895087			59892738	59893741	59899217	59899355	-0.13400	0.00000	0.00002	excluded	K562	AQR
SE	DEPDC1B	ENSG00000035499.8	chr5	-	59924040	59924190			59901510	59901683	59934576	59934717	-0.16500	0.00003	0.01185	excluded	K562	DROSHA
SE	DEPDC1B	ENSG00000035499.8	chr5	-	59943224	59943360			59941318	59941446	59982788	59983054	-0.05400	0.00010	0.00169	excluded	K562	AQR
SE	DEPDC1B	ENSG00000035499.8	chr5	-	59894901	59895087			59892738	59893741	59899217	59899394	-0.18000	0.00018	0.01396	excluded	K562	EFTUD2
SE	DEPDC1B	ENSG00000035499.8	chr5	-	59894901	59895087			59892738	59893741	59899217	59899394	-0.15600	0.00024	0.00790	excluded	HepG2	SRSF1
SE	DEPDC1B	ENSG00000035499.8	chr5	-	59924040	59924190			59901510	59901683	59934576	59934717	-0.16800	0.00042	0.06912	excluded	K562	NPM1
MXE	DEPDC1B	ENSG00000035499.8	chr5	-	59943224	59943360	59982788	59983054	59941318	59941446	59995872	59995961	0.16100	0.00064	0.03274	1included	K562	IGF2BP2
SE	DEPDC1B	ENSG00000035499.8	chr5	-	59894901	59895087			59892738	59893741	59899217	59899394	-0.09200	0.00071	0.02849	excluded	K562	TARDBP
SE	DEPDC1B	ENSG00000035499.8	chr5	-	59983551	59983665			59982788	59983054	59995872	59996017	0.19900	0.00167	0.08861	included	HepG2	SRSF9

Showing 1 to 10 of 13 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

DEPDC1B

General Information

Functions

Localization

Domains (AlphaFold: DEPDC1B)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for DEPDC1B is not avaliable on ENCORE database.

21 proteins are bound to DEPDC1B RNA:

eCLIP assay for DEPDC1B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for DEPDC1B is not available on ENCORE database.

138 RBPs can affect the gene expression of DEPDC1B :

The Knockdown/knockout RNA-Seq assay for DEPDC1B is not available on ENCORE database.

10 RBPs can affect the splicing of DEPDC1B :

The Knockdown/knockout RNA-Seq assay for DEPDC1B is not avaliable on ENCORE database.