CIT

General Information

Gene Name : CIT
Gene ID : ENSG00000122966.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CIT)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CIT	ENSG00000122966.15	8.65	10.07	9.36	ENCSR000AEF
HepG2	CIT	ENSG00000122966.15	11.69	11.07	11.38	ENCSR985KAT
K562	CIT	ENSG00000122966.15	12.87	14.35	13.61	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CIT is not avaliable on ENCORE database.

Proteins bound to RNA

CIT RNA is bound by 24 proteins.

CanvasJS.com

eCLIP assay for CIT is not avaliable on ENCORE database.

24 proteins are bound to CIT RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	120150941	120151007	-	intron-Distal,intron-Proximal	7.15518	30.67861	K562	AQR
chr12	120123963	120124061	-	3'-UTR,intron-Distal	4.33483	18.62108	K562	PUM2
chr12	120287977	120288065	-	CDS,intron-Distal,intron-Proximal	4.56494	17.30887	K562	DDX24
chr12	120221734	120221809	-	CDS,intron-Distal	5.11736	16.68518	K562	UCHL5
chr12	120124092	120124169	-	3'-UTR,intron-Distal	4.33211	16.16162	K562	UPF1
chr12	120189978	120190038	-	CDS,intron-Distal,intron-Proximal	4.19086	15.49760	K562	UCHL5
chr12	120214500	120214606	-	CDS,intron-Distal	3.40995	15.08592	K562	UCHL5
chr12	120150917	120150999	-	intron-Distal,intron-Proximal	4.51399	15.03023	K562	PRPF8
chr12	120204924	120204984	-	CDS,intron-Distal	5.86236	14.39302	K562	UCHL5
chr12	120208590	120208658	-	CDS,intron-Distal	5.11214	14.36289	K562	UCHL5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 128 entries

eCLIP assay for CIT is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CIT is not available on ENCORE database.
166 RBPs can affect the levels of CIT.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CIT is not available on ENCORE database.

166 RBPs can affect the gene expression of CIT :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CIT	ENSG00000122966.9	226.06700	1487.89520	-2.71850	147.78350	145.56240	HepG2	SRFBP1
CIT	ENSG00000122966.9	49.91780	1057.35700	-4.40480	138.15340	135.49710	HepG2	BOP1
CIT	ENSG00000122966.9	196.11090	1317.34450	-2.74790	113.73440	111.41880	HepG2	RBM22
CIT	ENSG00000122966.9	207.54980	988.87990	-2.25230	92.42660	89.95000	HepG2	CKAP4
CIT	ENSG00000122966.9	140.64580	921.07440	-2.71130	84.99700	82.94960	HepG2	TIAL1
CIT	ENSG00000122966.9	81.44570	1027.44100	-3.65710	76.16320	74.32410	HepG2	ZNF622
CIT	ENSG00000122966.9	249.43330	1187.52670	-2.25120	65.57730	63.16760	HepG2	PUF60
CIT	ENSG00000122966.9	85.45300	731.98400	-3.09860	64.22240	61.90260	HepG2	SUPV3L1
CIT	ENSG00000122966.9	124.27750	710.62010	-2.51550	60.71860	58.52350	HepG2	RPS19
CIT	ENSG00000122966.9	557.37070	1576.11760	-1.49970	56.40380	54.34220	HepG2	ETF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 199 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CIT is not available on ENCORE database.

14 RBPs can affect the splicing of CIT :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CIT	ENSG00000122966.9	chr12	-	120148853	120148898			120148344	120148425	120149982	120150152	0.57400	0.00004	0.05657	included	HepG2	GRWD1
SE	CIT	ENSG00000122966.9	chr12	-	120148853	120148898			120148344	120148425	120149982	120150152	-0.75300	0.00004	0.01032	excluded	K562	HNRNPM
MXE	CIT	ENSG00000122966.9	chr12	-	120149982	120150152	120150395	120150500	120148344	120148425	120151007	120151099	-0.20800	0.00005	0.01777	2included	K562	WDR43
A5SS	CIT	ENSG00000122966.9	chr12	-	120221992	120222869			120222763	120222869	120221711	120221855	0.08900	0.00006	0.00344	longer	K562	PUS1
A3SS	CIT	ENSG00000122966.9	chr12	-	120135780	120136027			120135780	120135859	120138549	120138630	-0.12700	0.00012	0.05950	shorter	K562	SBDS
SE	CIT	ENSG00000122966.9	chr12	-	120148853	120148898			120148344	120148425	120149982	120150152	-0.45000	0.00015	0.06505	excluded	K562	NCBP2
SE	CIT	ENSG00000122966.9	chr12	-	120148853	120148898			120148344	120148425	120149982	120150152	-0.34100	0.00022	0.00968	excluded	K562	AKAP8L
A3SS	CIT	ENSG00000122966.9	chr12	-	120220321	120220520			120220321	120220441	120221711	120221855	0.10200	0.00028	0.00225	longer	K562	AQR
A3SS	CIT	ENSG00000122966.9	chr12	-	120171968	120172211			120171968	120172162	120172964	120173162	0.06400	0.00037	0.00284	longer	K562	AQR
A3SS	CIT	ENSG00000122966.9	chr12	-	120156503	120156666			120156503	120156621	120158282	120158390	-0.14200	0.00060	0.05427	shorter	K562	AGGF1

Showing 1 to 10 of 18 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CIT

General Information

Functions

Localization

Domains (AlphaFold: CIT)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CIT is not avaliable on ENCORE database.

24 proteins are bound to CIT RNA:

eCLIP assay for CIT is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CIT is not available on ENCORE database.

166 RBPs can affect the gene expression of CIT :

The Knockdown/knockout RNA-Seq assay for CIT is not available on ENCORE database.

14 RBPs can affect the splicing of CIT :

The Knockdown/knockout RNA-Seq assay for CIT is not avaliable on ENCORE database.