ATAD5

General Information

Gene Name : ATAD5
Gene ID : ENSG00000176208.8
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ATAD5)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ATAD5	ENSG00000176208.8	10.47	9.23	9.85	ENCSR000AEF
HepG2	ATAD5	ENSG00000176208.8	2.36	5.87	4.12	ENCSR985KAT
K562	ATAD5	ENSG00000176208.8	11.51	11.83	11.67	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ATAD5 is not avaliable on ENCORE database.

Proteins bound to RNA

ATAD5 RNA is bound by 22 proteins.

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eCLIP assay for ATAD5 is not avaliable on ENCORE database.

22 proteins are bound to ATAD5 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	29183798	29183853	+	intron-Distal	4.81521	20.12358	K562	KHSRP
chr17	29195129	29195317	+	intron-Distal,intron-Proximal	6.17002	19.36501	HepG2	QKI
chr17	29183853	29183902	+	intron-Distal,intron-Proximal	4.05476	17.45287	K562	KHSRP
chr17	29187526	29187625	+	CDS	3.17142	13.17713	K562	ZNF622
chr17	29196328	29196402	+	CDS	4.23345	12.54198	K562	DDX24
chr17	29182205	29182289	+	CDS	3.97736	11.70058	K562	ZNF622
chr17	29195347	29195431	+	CDS,intron-Proximal	3.41954	11.22158	K562	DDX24
chr17	29205045	29205112	+	CDS	3.53271	11.16701	K562	DDX24
chr17	29196265	29196328	+	CDS,intron-Proximal	3.78077	10.51333	K562	DDX24
chr17	29195145	29195330	+	intron-Distal,intron-Proximal	4.27436	9.28510	K562	QKI
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 52 entries

eCLIP assay for ATAD5 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ATAD5 is not available on ENCORE database.
149 RBPs can affect the levels of ATAD5.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ATAD5 is not available on ENCORE database.

149 RBPs can affect the gene expression of ATAD5 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ATAD5	ENSG00000176208.4	58.17550	463.11720	-2.99290	70.33320	68.54850	HepG2	ZNF622
ATAD5	ENSG00000176208.4	124.91860	605.86310	-2.27800	55.46530	53.96650	HepG2	SRFBP1
ATAD5	ENSG00000176208.4	47.28460	431.96630	-3.19150	51.10730	49.17280	HepG2	BOP1
ATAD5	ENSG00000176208.4	54.90490	328.89180	-2.58260	36.70890	35.26860	HepG2	TIAL1
ATAD5	ENSG00000176208.4	144.80770	536.41830	-1.88920	34.70200	33.26380	HepG2	RBM22
ATAD5	ENSG00000176208.4	97.76350	385.32530	-1.97870	34.20700	32.46790	HepG2	CKAP4
ATAD5	ENSG00000176208.4	134.59630	518.18030	-1.94480	31.15050	29.44240	HepG2	PUF60
ATAD5	ENSG00000176208.4	54.45430	313.61300	-2.52590	30.16310	28.43800	HepG2	RPLP0
ATAD5	ENSG00000176208.4	55.37340	381.75640	-2.78540	29.10520	27.33540	HepG2	SUPV3L1
ATAD5	ENSG00000176208.4	103.05520	429.01120	-2.05760	25.61020	24.01350	HepG2	HNRNPLL
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 171 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ATAD5 is not available on ENCORE database.

14 RBPs can affect the splicing of ATAD5 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	ATAD5	ENSG00000176208.4	chr17	+	29192721	29192818	29187450	29187630	29195350	29195430	-0.09800	0.00000	0.00001	excluded	K562	PUS1
SE	ATAD5	ENSG00000176208.4	chr17	+	29192721	29192818	29187450	29187630	29195350	29195430	-0.21700	0.00000	0.00000	excluded	K562	U2AF2
SE	ATAD5	ENSG00000176208.4	chr17	+	29206440	29206505	29205020	29205114	29214209	29214390	-0.23500	0.00000	0.00001	excluded	K562	RBM15
SE	ATAD5	ENSG00000176208.4	chr17	+	29192721	29192818	29187450	29187630	29195350	29195430	-0.08800	0.00000	0.00012	excluded	K562	AGGF1
SE	ATAD5	ENSG00000176208.4	chr17	+	29220311	29221168	29219624	29219806	29221581	29221740	-0.12700	0.00000	0.00006	excluded	K562	PTBP1
A3SS	ATAD5	ENSG00000176208.4	chr17	+	29187417	29187630	29187450	29187630	29185178	29185341	0.10400	0.00000	0.00000	longer	K562	AQR
SE	ATAD5	ENSG00000176208.4	chr17	+	29206440	29206505	29205020	29205114	29214209	29214390	-0.22600	0.00001	0.00120	excluded	K562	HNRNPU
SE	ATAD5	ENSG00000176208.4	chr17	+	29192721	29192818	29187450	29187630	29195350	29195430	-0.14400	0.00002	0.00067	excluded	K562	U2AF1
SE	ATAD5	ENSG00000176208.4	chr17	+	29206440	29206505	29205020	29205114	29214209	29214390	0.19100	0.00002	0.00169	included	K562	TARDBP
SE	ATAD5	ENSG00000176208.4	chr17	+	29206440	29206505	29205020	29205114	29214209	29214390	0.20300	0.00003	0.00252	included	K562	FXR1

Showing 1 to 10 of 27 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ATAD5

General Information

Functions

Localization

Domains (AlphaFold: ATAD5)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ATAD5 is not avaliable on ENCORE database.

22 proteins are bound to ATAD5 RNA:

eCLIP assay for ATAD5 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ATAD5 is not available on ENCORE database.

149 RBPs can affect the gene expression of ATAD5 :

The Knockdown/knockout RNA-Seq assay for ATAD5 is not available on ENCORE database.

14 RBPs can affect the splicing of ATAD5 :

The Knockdown/knockout RNA-Seq assay for ATAD5 is not avaliable on ENCORE database.