GTF3C4

General Information

Gene Name       : GTF3C4
Gene ID             : ENSG00000125484.11
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: GTF3C4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GTF3C4ENSG00000125484.119.919.709.80ENCSR000AEF
HepG2GTF3C4ENSG00000125484.117.4510.819.13ENCSR985KAT
K562GTF3C4ENSG00000125484.1111.5311.5611.54ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
GTF3C4Ribo-STAMP-293TshRNABGRSLV03-31,BGRSLV03-32BGRSLV03-1,BGRSLV03-2NotSatisfiedENCORE2
GTF3C4Ribo-STAMP-293TshRNABGRSLV04-7,BGRSLV04-8BGRSLV04-1,BGRSLV04-2NotSatisfiedENCORE2
GTF3C4Ribo-STAMP-293TshRNABGRSLV09-15,BGRSLV09-16BGRSLV09-1,BGRSLV09-2NotSatisfiedENCORE2
GTF3C4Ribo-STAMP-293TshRNABGRSLV09-17,BGRSLV09-18BGRSLV09-1,BGRSLV09-2NotSatisfiedENCORE2
GTF3C4Ribo-STAMP-293TshRNABGRSDLV02-33,BGRSDLV02-34BGRSDLV02-1,BGRSDLV02-2SubmittedENCORE2
GTF3C4Ribo-STAMP-293TshRNAGTF3C4-BGRSDLV02-35dox,GTF3C4-BGRSDLV02-36doxGTF3C4-BGRSDLV02-33,GTF3C4-BGRSDLV02-34,SubmittedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GTF3C4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • GTF3C4 RNA is bound by 11 proteins.  







eCLIP assay for GTF3C4 is not avaliable on ENCORE database.





11 proteins are bound to GTF3C4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr9135565030135565122+3'-UTR4.192483.97692K562IGF2BP1
chr9135569590135569702+3'-UTR4.953396.95115K562CPSF6
chr9135569545135569642+3'-UTR7.7992023.36289K562PUM2
chr9135570168135570275+3'-UTR5.9884620.53731K562PUM2
chr9135566005135566063+3'-UTR3.672574.23488K562FAM120A
chr9135565355135565453+3'-UTR3.815897.50442K562UPF1
chr9135564440135564503+3'-UTR5.059517.21258K562LIN28B
chr9135565209135565275+3'-UTR3.058164.31933K562FAM120A
chr9135569606135569663+3'-UTR4.668105.48218K562FAM120A
chr9135564330135564382+3'-UTR4.915876.76118K562LIN28B
chr9135565381135565425+3'-UTR3.198804.79181K562FAM120A
chr9135565180135565271+3'-UTR5.485729.47550K562UPF1
chr9135567653135567711+3'-UTR3.239893.06830K562UPF1
chr9135569642135569695+3'-UTR6.470039.84608K562PUM2
chr9135545881135546015+5'-UTR,CDS4.085953.70701HepG2PRPF4
chr9135545895135545984+5'-UTR3.355885.06399K562DDX3X
chr9135545885135545997+5'-UTR,CDS3.859119.39478HepG2DDX3X
chr9135564315135564330+CDS4.212064.34615K562LIN28B
chr9135546032135546138+CDS4.552964.79286HepG2PRPF4
chr9135546004135546125+CDS4.865735.96254K562FMR1
chr9135558918135558978+CDS,intron-Proximal4.846024.86944K562AQR
chr9135555178135555244+CDS,intron-Proximal3.247594.77826K562AQR
chr9135546132135546278+CDS4.116705.82909K562FMR1
chr9135558878135559005+CDS,intron-Proximal3.503714.51027K562BUD13
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GTF3C4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GTF3C4 is not available on ENCORE database.

  • 74 RBPs can affect the levels of GTF3C4.  








The Knockdown/knockout RNA-Seq assay for GTF3C4 is not available on ENCORE database.





74 RBPs can affect the gene expression of GTF3C4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GTF3C4ENSG00000125484.7982.18130816.540900.266402.530501.94420HepG2ACO1
GTF3C4ENSG00000125484.71646.127801038.191900.664906.107605.35250HepG2AKAP1
GTF3C4ENSG00000125484.7897.407101431.52820-0.673709.841908.67960HepG2AUH
GTF3C4ENSG00000125484.7550.28650784.94780-0.512404.917403.92620HepG2CALR
GTF3C4ENSG00000125484.7506.66170671.45180-0.406302.600501.93130HepG2CPSF6
GTF3C4ENSG00000125484.7931.450201120.42420-0.266502.283501.68970HepG2CELF1
GTF3C4ENSG00000125484.7732.050001204.71460-0.7187016.4636014.91630HepG2DAZAP1
GTF3C4ENSG00000125484.7905.41260755.182100.261702.514901.71680HepG2DDX19B
GTF3C4ENSG00000125484.7526.16570769.40960-0.548202.381201.74600HepG2DDX21
GTF3C4ENSG00000125484.7550.64540834.25010-0.599403.784502.30890HepG2DDX27
GTF3C4ENSG00000125484.7581.44970891.62180-0.616804.621403.64930HepG2DDX55
GTF3C4ENSG00000125484.7559.25830737.01730-0.398203.572402.77970HepG2DNAJC21
GTF3C4ENSG00000125484.7573.96540730.52220-0.348003.582302.85820HepG2DNAJC2
GTF3C4ENSG00000125484.7612.87280821.26450-0.422302.665802.08420HepG2EIF2S1
GTF3C4ENSG00000125484.7811.930201138.54190-0.487804.299503.29940HepG2EIF4G2
GTF3C4ENSG00000125484.72318.912901643.482200.4966010.560909.50920HepG2ETF1
GTF3C4ENSG00000125484.71118.70040850.764500.394902.618901.86880HepG2FIP1L1
GTF3C4ENSG00000125484.71188.23770901.815800.397802.862101.95250HepG2G3BP2
GTF3C4ENSG00000125484.7763.04440931.13080-0.287202.703301.99390HepG2HNRNPF
GTF3C4ENSG00000125484.7890.933601097.39780-0.300703.403102.66300HepG2HNRNPL
GTF3C4ENSG00000125484.7453.72020726.32390-0.678804.244603.47960HepG2HNRNPLL
GTF3C4ENSG00000125484.7772.18660587.111000.395203.214702.19680HepG2HNRNPM
GTF3C4ENSG00000125484.7590.28500822.18160-0.478005.712304.86640HepG2HNRNPU
GTF3C4ENSG00000125484.7617.20080839.83050-0.444405.651804.63630HepG2ILF2
GTF3C4ENSG00000125484.71223.94290916.040600.418002.994402.31270HepG2MAGOH
GTF3C4ENSG00000125484.71657.90340921.168300.847709.822408.69040HepG2MATR3
GTF3C4ENSG00000125484.71268.77070942.867600.428203.068202.40310HepG2NCBP2
GTF3C4ENSG00000125484.71428.838001194.593400.258202.245001.55790HepG2NOL12
GTF3C4ENSG00000125484.71107.40210874.882400.339903.573402.90210HepG2PCBP1
GTF3C4ENSG00000125484.7605.66500733.31950-0.275901.975801.34420HepG2PPIL4
GTF3C4ENSG00000125484.7981.48720786.534800.319403.031602.22690HepG2PRPF4
GTF3C4ENSG00000125484.71105.67420866.731900.351202.874202.00260HepG2RBM15
GTF3C4ENSG00000125484.71278.39900937.021900.448103.578102.44190HepG2RBM27
GTF3C4ENSG00000125484.71414.30600990.724900.513407.782606.95690HepG2NELFE
GTF3C4ENSG00000125484.71179.71670922.668100.354503.839303.12890HepG2RECQL
GTF3C4ENSG00000125484.7774.678701003.11870-0.372802.947602.24570HepG2RPLP0
GTF3C4ENSG00000125484.7547.76350732.18650-0.418704.426503.64490HepG2SAFB2
GTF3C4ENSG00000125484.71275.78380959.622400.410702.045301.46440HepG2SF3A3
GTF3C4ENSG00000125484.71981.71460799.896901.3088011.316809.75150HepG2SNRNP70
GTF3C4ENSG00000125484.71336.148401551.54640-0.215601.759901.33250HepG2SRFBP1
GTF3C4ENSG00000125484.71409.32030967.422100.542709.028508.28390HepG2SRSF1
GTF3C4ENSG00000125484.7677.76110914.81970-0.432705.292904.38110HepG2SRSF7
GTF3C4ENSG00000125484.7955.94550787.025400.280402.558002.02230HepG2SRSF9
GTF3C4ENSG00000125484.71517.238401280.492200.244602.845402.21670HepG2SUCLG1
GTF3C4ENSG00000125484.7649.04790887.58910-0.451602.745002.07040HepG2SUPV3L1
GTF3C4ENSG00000125484.71084.62250869.479300.318902.404501.87560HepG2TAF15
GTF3C4ENSG00000125484.7556.92010798.88680-0.520505.402104.75060HepG2TIAL1
GTF3C4ENSG00000125484.7671.34960806.04570-0.263802.208201.69320HepG2TRIM56
GTF3C4ENSG00000125484.7389.31150524.32170-0.429502.462101.74570HepG2UCHL5
GTF3C4ENSG00000125484.71183.03330821.644500.525808.382607.43130HepG2UTP3
GTF3C4ENSG00000125484.7452.06610637.78740-0.496502.624601.56390HepG2XPO5
GTF3C4ENSG00000125484.7617.74690873.73440-0.500203.590102.77260HepG2XRN2
GTF3C4ENSG00000125484.71175.23240869.996100.433803.793602.38740K562AARS
GTF3C4ENSG00000125484.75785.307402211.380001.3873042.9629040.89840K562AQR
GTF3C4ENSG00000125484.71178.704201420.94700-0.269703.052902.04820K562BCLAF1
GTF3C4ENSG00000125484.71109.432101440.14530-0.376403.176901.79160K562CIRBP
GTF3C4ENSG00000125484.7859.447601100.23060-0.356303.071902.24630K562CPSF6
GTF3C4ENSG00000125484.7874.868601078.00020-0.301202.385401.41400K562CSTF2
GTF3C4ENSG00000125484.7989.779301245.82430-0.331903.877102.28000K562DDX27
GTF3C4ENSG00000125484.72565.654001847.724600.473509.616908.48960K562DDX47
GTF3C4ENSG00000125484.71442.706301910.41980-0.405105.812304.82770K562EIF2S2
GTF3C4ENSG00000125484.71430.197101080.280000.404704.992403.93800K562EIF3G
GTF3C4ENSG00000125484.71499.879701080.986800.472404.938903.83900K562EIF4A3
GTF3C4ENSG00000125484.71305.758001683.60690-0.366703.111502.20830K562FIP1L1
GTF3C4ENSG00000125484.71894.230401124.183900.7526017.8476016.42000K562FXR1
GTF3C4ENSG00000125484.71333.83220956.681600.479403.127102.36730K562G3BP2
GTF3C4ENSG00000125484.71682.660602545.96840-0.597508.880907.50510K562GRSF1
GTF3C4ENSG00000125484.71567.609002282.55290-0.542106.418405.22030K562HSPD1
GTF3C4ENSG00000125484.72032.636401412.179200.525307.055105.68770K562MAGOH
GTF3C4ENSG00000125484.71317.696901543.77540-0.228402.968502.19950K562NSUN2
GTF3C4ENSG00000125484.71699.380101256.571300.435404.444503.19850K562PCBP2
GTF3C4ENSG00000125484.71378.820601911.28930-0.471104.716903.60430K562PPIG
GTF3C4ENSG00000125484.71861.180301266.261500.555506.369705.23310K562PRPF8
GTF3C4ENSG00000125484.71767.543401371.987200.365402.841702.16960K562PTBP1
GTF3C4ENSG00000125484.71723.193901315.815800.389003.559602.59840K562RBM22
GTF3C4ENSG00000125484.71338.748501054.542700.344202.861501.76040K562SAFB
GTF3C4ENSG00000125484.71811.808201523.198500.250202.469301.69600K562SF3A3
GTF3C4ENSG00000125484.71038.669501268.22350-0.288103.092301.84980K562SRSF7
GTF3C4ENSG00000125484.71659.117101187.150100.482806.249205.00880K562SYNCRIP
GTF3C4ENSG00000125484.71269.63500958.261600.405804.368403.36340K562U2AF2
GTF3C4ENSG00000125484.71137.843101400.64640-0.299802.506401.67120K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GTF3C4 is not available on ENCORE database.





1 RBPs can affect the splicing of GTF3C4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSGTF3C4ENSG00000125484.7chr9+1355626101355627141355626251355627141355589491355590800.134000.000000.00000longerK562AQR
A3SSGTF3C4ENSG00000125484.7chr9+1355588881355590801355589491355590801355533631355551900.051000.001720.01129longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GTF3C4 is not avaliable on ENCORE database.