CPEB1

General Information

Gene Name       : CPEB1
Gene ID             : ENSG00000214575.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CPEB1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CPEB1ENSG00000214575.90.430.440.43ENCSR000AEF
HepG2CPEB1ENSG00000214575.90.000.170.09ENCSR985KAT
K562CPEB1ENSG00000214575.96.567.386.97ENCSR000AEO

Assays

1 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
RNA Bind-n-SeqRBNS: CPEB1ENCSR084YCOCPEB1cell-free sampleReleased






  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  
  GeneName    gene_aliases    Status    Project    Note  
CPEB1CPEB1ReleasedENCODE3


  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CPEB1 is not avaliable on ENCORE database.


  • The binding motifs of CPEB1

    • Trulli

Proteins bound to RNA
  • CPEB1 RNA is bound by 8 proteins.  







eCLIP assay for CPEB1 is not avaliable on ENCORE database.





8 proteins are bound to CPEB1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr158322481383224902-3'-UTR,CDS,intron-Distal,intron-Proximal3.180235.63069K562AQR
chr158322262983222727-3'-UTR,CDS,intron-Distal4.241324.07072K562UCHL5
chr158331607583316150-5'-UTR,intron-Distal,intron-Proximal4.511328.40323K562NONO
chr158331620583316249-5'-UTR,intron-Distal,intron-Proximal4.764936.64417K562NONO
chr158331577783315886-5'-UTR,intron-Distal,intron-Proximal3.936827.56606K562CSTF2T
chr158331575983315857-5'-UTR,intron-Distal5.565459.55926K562NONO
chr158322629283226521-CDS,intron-Distal,intron-Proximal3.8059210.05012K562PRPF8
chr158322645283226571-CDS,intron-Distal,intron-Proximal3.309433.91614K562BUD13
chr158331510583315144-intron-Distal4.194063.30664K562NONO
chr158328760583287655-intron-Distal4.931025.12361K562EXOSC5
chr158328822783288261-intron-Distal4.457254.48560K562EXOSC5
chr158331565383315724-intron-Distal4.102386.75450K562NONO
chr158322456983224618-intron-Distal,intron-Proximal4.784594.65563K562AQR
chr158328715883287219-intron-Distal5.6030310.67163K562EXOSC5
chr158322633083226453-intron-Distal,intron-Proximal3.707605.35619K562AQR
chr158328740483287446-intron-Distal5.093768.36716K562EXOSC5
chr158328796183288030-intron-Distal4.8153513.19705K562EXOSC5
chr158331497583315069-intron-Distal3.746419.48112K562NONO
chr158331528583315347-intron-Distal4.170718.40406K562NONO
chr158322063383220831-intron-Distal4.439265.51760K562MATR3
chr158328812983288165-intron-Distal4.470025.12432K562EXOSC5
chr158328830183288374-intron-Distal3.941829.39331K562EXOSC5
chr158328844383288513-intron-Distal4.9360112.87128K562EXOSC5
chr158331547683315532-intron-Distal3.600627.84057K562NONO
chr158328721983287273-intron-Distal4.479458.80920K562EXOSC5
chr158322547283225563-intron-Distal4.8533411.12698K562AQR
chr158328773183287779-intron-Distal4.775055.12361K562EXOSC5
chr158331541683315476-intron-Distal3.555697.45759K562NONO
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CPEB1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CPEB1 is not available on ENCORE database.

  • 25 RBPs can affect the levels of CPEB1.  








The Knockdown/knockout RNA-Seq assay for CPEB1 is not available on ENCORE database.





25 RBPs can affect the gene expression of CPEB1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CPEB1ENSG00000214575.522.299000.0000099999.999905.744604.77760HepG2EIF4B
CPEB1ENSG00000214575.523.887402.928503.027903.925703.23090HepG2ETF1
CPEB1ENSG00000214575.57.801000.0000099999.999901.961101.42550HepG2MATR3
CPEB1ENSG00000214575.570.501502.827204.6401016.4718014.91590HepG2PUM2
CPEB1ENSG00000214575.521.044002.447903.103703.698003.12160HepG2RBM22
CPEB1ENSG00000214575.530.666502.765303.471105.714705.06720HepG2SRFBP1
CPEB1ENSG00000214575.514.065101.515803.213902.731302.18660HepG2ZNF622
CPEB1ENSG00000214575.5821.99350569.059100.530404.821903.95110K562AKAP8L
CPEB1ENSG00000214575.5428.90870316.865400.436702.158401.39450K562BOP1
CPEB1ENSG00000214575.5456.50860336.898300.438202.709601.93430K562CPSF6
CPEB1ENSG00000214575.5904.03310625.486200.531307.093406.11740K562DDX47
CPEB1ENSG00000214575.5298.94500407.55700-0.447102.285701.45530K562EFTUD2
CPEB1ENSG00000214575.5394.69400527.19530-0.417603.153702.39280K562EIF2S2
CPEB1ENSG00000214575.5458.01230342.825800.417802.268601.49150K562FMR1
CPEB1ENSG00000214575.5601.16510372.518300.690302.513001.36690K562HNRNPA2B1
CPEB1ENSG00000214575.5355.48430465.37220-0.388602.131001.59830K562HNRNPC
CPEB1ENSG00000214575.5740.40840536.582300.464404.465903.32300K562HNRNPU
CPEB1ENSG00000214575.5673.265901036.29260-0.622208.302805.18540K562CCAR2
CPEB1ENSG00000214575.5641.82280482.762500.410803.574502.66230K562MTPAP
CPEB1ENSG00000214575.5248.58940396.60020-0.673904.200603.27670K562PRPF8
CPEB1ENSG00000214575.5745.82030564.335600.402202.668102.13180K562PUS1
CPEB1ENSG00000214575.5294.96610407.61140-0.466603.100302.19250K562SF3B4
CPEB1ENSG00000214575.5713.62920409.150800.802403.037201.52180K562SUPT6H
CPEB1ENSG00000214575.5591.13610401.332500.558603.786402.68710K562TIAL1
CPEB1ENSG00000214575.5636.90470486.666400.388002.726501.85580K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CPEB1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of CPEB1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for CPEB1 is not avaliable on ENCORE database.