ZNF354A

General Information

Gene Name       : ZNF354A
Gene ID             : ENSG00000169131.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ZNF354A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZNF354AENSG00000169131.126.905.015.96ENCSR000AEF
HepG2ZNF354AENSG00000169131.121.432.551.99ENCSR985KAT
K562ZNF354AENSG00000169131.121.382.201.79ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
ZNF354ARibo-STAMP-293TshRNAZNF354A-BGRSLV08-25,ZNF354A-BGRSLV08-26NT-BGRSLV08-1,NT-BGRSLV08-2,SubmittedENCORE2
ZNF354ARibo-STAMP-293TshRNABGRSLV08-27,BGRSLV08-28BGRSLV08-1,BGRSLV08-2NotSatisfiedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZNF354A is not avaliable on ENCORE database.



Proteins bound to RNA
  • ZNF354A RNA is bound by 1 proteins.  







eCLIP assay for ZNF354A is not avaliable on ENCORE database.





1 proteins are bound to ZNF354A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5178157514178157537-intron-Distal4.528434.62947HepG2AQR
chr5178157537178157557-intron-Distal4.493244.62947HepG2AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZNF354A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZNF354A is not available on ENCORE database.

  • 37 RBPs can affect the levels of ZNF354A.  








The Knockdown/knockout RNA-Seq assay for ZNF354A is not available on ENCORE database.





37 RBPs can affect the gene expression of ZNF354A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZNF354AENSG00000169131.6133.0807082.422100.691102.263501.64170HepG2DDX21
ZNF354AENSG00000169131.6192.74270135.266900.510802.226101.46100HepG2EIF4G1
ZNF354AENSG00000169131.6280.39450193.212900.537202.702102.10680HepG2ETF1
ZNF354AENSG00000169131.6334.88320185.876900.849204.341703.39460HepG2FIP1L1
ZNF354AENSG00000169131.6162.5328097.876200.731602.609901.92970HepG2HNRNPK
ZNF354AENSG00000169131.656.6520098.82480-0.802702.617802.02880HepG2HNRNPU
ZNF354AENSG00000169131.6196.63400135.946900.532402.369901.66530HepG2NOL12
ZNF354AENSG00000169131.6173.4297095.075000.867102.739102.03750HepG2RAVER1
ZNF354AENSG00000169131.6428.88490161.483501.4091017.9525016.86530HepG2RBM22
ZNF354AENSG00000169131.6146.8048095.120300.626002.121601.52530HepG2RBM25
ZNF354AENSG00000169131.6153.50120100.300700.613802.182501.62660HepG2RECQL
ZNF354AENSG00000169131.6112.3188063.519500.822202.423301.68320HepG2RRP9
ZNF354AENSG00000169131.6159.18760100.756200.659802.456901.89500HepG2SF3B4
ZNF354AENSG00000169131.6326.22720182.377600.838806.665405.98140HepG2SRFBP1
ZNF354AENSG00000169131.6198.4309094.518801.069906.596905.79560HepG2TAF15
ZNF354AENSG00000169131.6139.1458086.857900.679802.545401.74130HepG2TIA1
ZNF354AENSG00000169131.6326.33910159.016701.037104.599803.79940HepG2U2AF1
ZNF354AENSG00000169131.6268.51470128.964401.057902.586801.63440HepG2U2AF2
ZNF354AENSG00000169131.686.1863048.937300.816402.379901.67570HepG2UCHL5
ZNF354AENSG00000169131.6171.36320104.518600.713202.543101.53170HepG2XRCC6
ZNF354AENSG00000169131.6275.35450191.341700.525003.239302.66150HepG2ZNF622
ZNF354AENSG00000169131.6105.58750175.22200-0.730703.345302.73280K562AGGF1
ZNF354AENSG00000169131.688.68880182.32140-1.039705.607104.66010K562AKAP8L
ZNF354AENSG00000169131.6347.31600203.534200.770906.767005.81350K562DDX47
ZNF354AENSG00000169131.674.81240120.20080-0.684102.301101.63590K562EIF2S2
ZNF354AENSG00000169131.6151.9958094.431000.686602.330801.68970K562G3BP2
ZNF354AENSG00000169131.6132.8255076.371800.798302.762502.16600K562HNRNPC
ZNF354AENSG00000169131.6204.4503092.172101.149206.480504.52630K562HNRNPK
ZNF354AENSG00000169131.6126.36890193.50610-0.614702.693601.88070K562KIF1C
ZNF354AENSG00000169131.6112.99730185.21870-0.712902.542201.52700K562MAK16
ZNF354AENSG00000169131.679.11210151.94080-0.941503.277802.30250K562NAA15
ZNF354AENSG00000169131.668.51900132.61690-0.952702.375901.47270K562PABPN1
ZNF354AENSG00000169131.6181.88080120.172100.597802.081101.35960K562PCBP3
ZNF354AENSG00000169131.6140.2013092.177700.604902.038101.35070K562POLR2G
ZNF354AENSG00000169131.661.24410180.84860-1.562108.796907.87740K562PUS1
ZNF354AENSG00000169131.679.19520176.18000-1.153606.534705.64870K562RBM15
ZNF354AENSG00000169131.6126.5675062.493601.018003.473702.55550K562RPS19
ZNF354AENSG00000169131.6193.10280130.572200.564402.689301.85380K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZNF354A is not available on ENCORE database.






No RBPs affect the alternative splcing events of ZNF354A on ENCORE database.





The Knockdown/knockout RNA-Seq assay for ZNF354A is not avaliable on ENCORE database.