YIPF1

General Information

Gene Name : YIPF1
Gene ID : ENSG00000058799.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: YIPF1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	YIPF1	ENSG00000058799.14	19.06	15.94	17.50	ENCSR000AEF
HepG2	YIPF1	ENSG00000058799.14	12.00	19.94	15.97	ENCSR985KAT
K562	YIPF1	ENSG00000058799.14	18.04	18.35	18.20	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for YIPF1 is not avaliable on ENCORE database.

Proteins bound to RNA

YIPF1 RNA is bound by 1 proteins.

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eCLIP assay for YIPF1 is not avaliable on ENCORE database.

1 proteins are bound to YIPF1 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	54355385	54355466	-	5'-UTR,intron-Distal,intron-Proximal	4.73392	3.69821	K562	DDX3X
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 1 of 1 entries

eCLIP assay for YIPF1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for YIPF1 is not available on ENCORE database.
45 RBPs can affect the levels of YIPF1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for YIPF1 is not available on ENCORE database.

45 RBPs can affect the gene expression of YIPF1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
YIPF1	ENSG00000058799.9	785.39800	446.09250	0.81600	8.22980	6.95330	HepG2	CIRBP
YIPF1	ENSG00000058799.9	531.25160	307.64820	0.78800	7.40600	6.14300	HepG2	MSI2
YIPF1	ENSG00000058799.9	1018.71270	669.94410	0.60450	6.74460	5.46970	K562	PUF60
YIPF1	ENSG00000058799.9	491.86700	323.39340	0.60490	6.16900	5.33420	HepG2	ACO1
YIPF1	ENSG00000058799.9	118.67580	335.46790	-1.49910	6.82500	5.23540	HepG2	FTO
YIPF1	ENSG00000058799.9	538.11390	368.10980	0.54770	5.91320	5.19220	HepG2	ZNF622
YIPF1	ENSG00000058799.9	495.73310	329.38990	0.58970	5.94470	5.10290	HepG2	PUS1
YIPF1	ENSG00000058799.9	364.21270	209.81200	0.79560	5.95490	5.09330	HepG2	RPS19
YIPF1	ENSG00000058799.9	918.22240	567.46890	0.69420	5.48600	4.76680	HepG2	AKAP1
YIPF1	ENSG00000058799.9	237.58590	380.78970	-0.68050	5.25740	3.93360	K562	MATR3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 49 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for YIPF1 is not available on ENCORE database.

24 RBPs can affect the splicing of YIPF1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	YIPF1	ENSG00000058799.9	chr1	-	54320673	54320724	54317391	54317943	54325728	54325826	0.36900	0.00064	included	HepG2	G3BP1
SE	YIPF1	ENSG00000058799.9	chr1	-	54320673	54320724	54317391	54317943	54325728	54325826	0.37500	0.00071	included	HepG2	RBM22
SE	YIPF1	ENSG00000058799.9	chr1	-	54354916	54355136	54354579	54354659	54355385	54355453	-0.38000	0.00000	excluded	HepG2	U2AF1
SE	YIPF1	ENSG00000058799.9	chr1	-	54354916	54355136	54354579	54354659	54355385	54355453	-0.32100	0.00085	excluded	K562	XRCC6
SE	YIPF1	ENSG00000058799.9	chr1	-	54320673	54320724	54317391	54317943	54325728	54325826	0.54000	0.00004	included	HepG2	PTBP1
SE	YIPF1	ENSG00000058799.9	chr1	-	54320673	54320724	54317391	54317943	54325728	54325826	0.55800	0.00000	included	HepG2	MATR3
SE	YIPF1	ENSG00000058799.9	chr1	-	54320673	54320724	54317391	54317943	54325728	54325826	0.33800	0.00061	included	HepG2	IGF2BP3
SE	YIPF1	ENSG00000058799.9	chr1	-	54354916	54355136	54354579	54354659	54355385	54355507	-0.40500	0.00002	excluded	HepG2	PCBP1
SE	YIPF1	ENSG00000058799.9	chr1	-	54320673	54320724	54317391	54317943	54325728	54325826	0.45200	0.00031	included	HepG2	KHSRP
SE	YIPF1	ENSG00000058799.9	chr1	-	54320673	54320724	54317391	54317943	54325728	54325826	0.48000	0.00003	included	K562	PTBP1

Showing 1 to 10 of 31 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

YIPF1

General Information

Functions

Localization

Domains (AlphaFold: YIPF1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for YIPF1 is not avaliable on ENCORE database.

1 proteins are bound to YIPF1 RNA:

eCLIP assay for YIPF1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for YIPF1 is not available on ENCORE database.

45 RBPs can affect the gene expression of YIPF1 :

The Knockdown/knockout RNA-Seq assay for YIPF1 is not available on ENCORE database.

24 RBPs can affect the splicing of YIPF1 :

The Knockdown/knockout RNA-Seq assay for YIPF1 is not avaliable on ENCORE database.