TRAPPC1

General Information

Gene Name       : TRAPPC1
Gene ID             : ENSG00000170043.11
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: TRAPPC1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TRAPPC1ENSG00000170043.11124.24152.23138.23ENCSR000AEF
HepG2TRAPPC1ENSG00000170043.11133.6394.28113.95ENCSR985KAT
K562TRAPPC1ENSG00000170043.1157.0755.7056.39ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TRAPPC1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TRAPPC1 RNA is bound by 7 proteins.  







eCLIP assay for TRAPPC1 is not avaliable on ENCORE database.





7 proteins are bound to TRAPPC1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1778344347834468-3'-UTR,CDS,intron-Distal,intron-Proximal3.758596.59132K562YBX3
chr1778338277833945-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.440314.05694K562IGF2BP1
chr1778343407834427-3'-UTR,CDS,intron-Distal,intron-Proximal4.1408914.27079K562YBX3
chr1778337007833738-3'-UTR,intron-Distal,intron-Proximal4.613764.60160HepG2LARP4
chr1778339117833950-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.020996.31568HepG2LARP4
chr1778338017833905-3'-UTR,5'-UTR,intron-Distal,intron-Proximal4.5473610.80373K562IGF2BP2
chr1778336837833778-3'-UTR,intron-Distal,intron-Proximal5.5231016.52088HepG2PCBP2
chr1778337787833859-3'-UTR,5'-UTR,intron-Distal,intron-Proximal4.382388.85307HepG2PCBP2
chr1778337017833782-3'-UTR,intron-Distal,intron-Proximal3.379905.09613K562IGF2BP2
chr1778343297834386-3'-UTR,CDS,intron-Distal,intron-Proximal4.073673.20743HepG2PPIG
chr1778338397833911-3'-UTR,5'-UTR,intron-Distal4.309785.16762K562YBX3
chr1778338177833900-3'-UTR,5'-UTR,intron-Distal,intron-Proximal4.9199310.60800HepG2LARP4
chr1778351557835261-5'-UTR,intron-Distal,intron-Proximal3.7442015.36654K562DDX3X
chr1778351547835253-5'-UTR,intron-Distal,intron-Proximal4.8293325.83866HepG2DDX3X
chr1778348237834864-CDS,intron-Distal,intron-Proximal4.088998.68374K562YBX3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TRAPPC1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TRAPPC1 is not available on ENCORE database.

  • 82 RBPs can affect the levels of TRAPPC1.  








The Knockdown/knockout RNA-Seq assay for TRAPPC1 is not available on ENCORE database.





82 RBPs can affect the gene expression of TRAPPC1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TRAPPC1ENSG00000170043.71893.432501028.443400.8804010.236409.27860HepG2AKAP1
TRAPPC1ENSG00000170043.7995.36210695.134000.517807.143805.97680HepG2AKAP8L
TRAPPC1ENSG00000170043.71225.07750850.889800.525704.424603.44210HepG2ASCC1
TRAPPC1ENSG00000170043.71320.421701033.319700.353604.465703.62960HepG2AUH
TRAPPC1ENSG00000170043.7871.13880667.275500.384502.502501.33040HepG2BUD13
TRAPPC1ENSG00000170043.71171.81000808.423500.535504.600103.61640HepG2CIRBP
TRAPPC1ENSG00000170043.7863.81250691.724300.320403.308702.59260HepG2CKAP4
TRAPPC1ENSG00000170043.7853.70910459.600400.893306.352705.19400HepG2CNOT7
TRAPPC1ENSG00000170043.71305.96720923.128000.500407.551206.58710HepG2CELF1
TRAPPC1ENSG00000170043.7862.78260639.908400.431005.653204.51690HepG2DDX19B
TRAPPC1ENSG00000170043.7721.27340523.372100.462604.267702.84970HepG2DDX1
TRAPPC1ENSG00000170043.71501.33150985.040500.607905.815004.94010HepG2DDX3X
TRAPPC1ENSG00000170043.71163.65560631.963200.880708.123306.87730HepG2DDX55
TRAPPC1ENSG00000170043.71222.15990846.477300.529803.894503.17150HepG2DDX6
TRAPPC1ENSG00000170043.7370.90130494.97750-0.416302.510101.57520HepG2DHX30
TRAPPC1ENSG00000170043.7681.22480513.194200.408503.571102.77860HepG2DNAJC21
TRAPPC1ENSG00000170043.7672.03480508.671400.401704.205503.43330HepG2DNAJC2
TRAPPC1ENSG00000170043.7969.38240539.165800.846209.271907.70650HepG2EEF2
TRAPPC1ENSG00000170043.7652.01710449.451100.536603.712502.41920HepG2EFTUD2
TRAPPC1ENSG00000170043.71095.55340813.434400.429502.951002.33850HepG2EIF2S1
TRAPPC1ENSG00000170043.7605.74540437.667900.468802.662701.77450HepG2EIF3D
TRAPPC1ENSG00000170043.7431.71730583.85870-0.435503.085201.94840HepG2EIF3G
TRAPPC1ENSG00000170043.71316.06480898.793200.550104.249203.46100HepG2EIF4A3
TRAPPC1ENSG00000170043.7754.23350979.24290-0.376703.841902.88510HepG2EIF4G1
TRAPPC1ENSG00000170043.7926.51680676.089700.454504.079403.06560HepG2EWSR1
TRAPPC1ENSG00000170043.7515.22680391.195300.397202.646901.50530HepG2FAM120A
TRAPPC1ENSG00000170043.7218.92440832.65230-1.9273011.009709.02180HepG2FTO
TRAPPC1ENSG00000170043.7503.75290642.15160-0.350202.075801.38740HepG2FUBP3
TRAPPC1ENSG00000170043.71177.98050907.290700.376602.465701.81140HepG2FXR1
TRAPPC1ENSG00000170043.71128.93710841.410500.424002.838702.16530HepG2G3BP1
TRAPPC1ENSG00000170043.7549.48490389.682400.495702.944302.01800HepG2GEMIN5
TRAPPC1ENSG00000170043.7796.49130518.110900.620306.038805.13540HepG2HNRNPA1
TRAPPC1ENSG00000170043.71121.95360912.192500.298503.026002.05510HepG2HNRNPA2B1
TRAPPC1ENSG00000170043.71061.63610904.102200.231602.347601.71990HepG2HNRNPL
TRAPPC1ENSG00000170043.7491.96690620.49620-0.334902.252001.39340HepG2HNRNPM
TRAPPC1ENSG00000170043.7948.58490670.684800.500002.978001.69790HepG2HSPD1
TRAPPC1ENSG00000170043.71413.34360855.191900.724703.081502.37380HepG2IGF2BP2
TRAPPC1ENSG00000170043.7859.45310584.784300.555408.944307.70090HepG2ILF2
TRAPPC1ENSG00000170043.71624.937001024.795700.664905.680004.47810HepG2LARP4
TRAPPC1ENSG00000170043.7703.48970907.60950-0.367501.882001.33610HepG2MAGOH
TRAPPC1ENSG00000170043.7766.57730458.048600.742804.021102.76420HepG2METAP2
TRAPPC1ENSG00000170043.71199.64220934.055000.360902.218301.64870HepG2NCBP2
TRAPPC1ENSG00000170043.71178.60830984.194900.260002.170701.49340HepG2NOL12
TRAPPC1ENSG00000170043.7780.38270580.704200.426303.049901.36380HepG2NUP35
TRAPPC1ENSG00000170043.7541.79650834.78880-0.623708.746807.76670HepG2PCBP1
TRAPPC1ENSG00000170043.71159.36350939.516300.303202.280501.73150HepG2PUF60
TRAPPC1ENSG00000170043.7831.08750704.763300.237801.921201.38840HepG2PUS1
TRAPPC1ENSG00000170043.71369.13970991.583500.465406.199905.49950HepG2RBM22
TRAPPC1ENSG00000170043.7812.10750531.129900.612502.942301.84720HepG2RCC2
TRAPPC1ENSG00000170043.7766.61870945.34070-0.302302.522302.00220HepG2NELFE
TRAPPC1ENSG00000170043.7605.21430880.49900-0.540906.701005.80160HepG2RECQL
TRAPPC1ENSG00000170043.7685.33770425.886100.686206.820705.90380HepG2RPS19
TRAPPC1ENSG00000170043.7629.23510427.417800.557904.102202.96130HepG2SERBP1
TRAPPC1ENSG00000170043.71227.69700733.338500.743305.413904.45170HepG2SF3A3
TRAPPC1ENSG00000170043.7819.20150594.545600.462306.079305.18420HepG2SMN1
TRAPPC1ENSG00000170043.71576.046901119.967900.492809.262008.49350HepG2SRFBP1
TRAPPC1ENSG00000170043.71158.73370923.084200.327903.234902.73420HepG2SRSF1
TRAPPC1ENSG00000170043.7366.47820750.99600-1.0351020.0319018.79510HepG2SRSF9
TRAPPC1ENSG00000170043.71011.83090676.566900.580603.823302.24740HepG2SUGP2
TRAPPC1ENSG00000170043.71149.64110629.046000.869808.170307.10790HepG2SUPV3L1
TRAPPC1ENSG00000170043.7694.06220556.275000.319202.257901.79680HepG2TIAL1
TRAPPC1ENSG00000170043.7746.04960561.259400.410504.314703.64100HepG2TRIM56
TRAPPC1ENSG00000170043.71104.63610629.321700.811602.209801.33880HepG2U2AF2
TRAPPC1ENSG00000170043.7548.40630371.553300.561603.469402.62390HepG2UCHL5
TRAPPC1ENSG00000170043.7842.93360650.357700.374103.949503.13800HepG2UPF1
TRAPPC1ENSG00000170043.7851.95050592.027100.525007.424306.41230HepG2ZC3H8
TRAPPC1ENSG00000170043.71425.33680715.270900.9946033.8186032.45370HepG2ZNF622
TRAPPC1ENSG00000170043.71075.01010625.101900.7821014.6822013.48130K562AGGF1
TRAPPC1ENSG00000170043.7906.28160686.869300.399803.088802.03560K562AKAP8
TRAPPC1ENSG00000170043.71096.61550650.441200.753504.202803.39520K562AKAP8L
TRAPPC1ENSG00000170043.7855.96570682.458500.326702.670901.77440K562ATP5C1
TRAPPC1ENSG00000170043.7971.02910747.049700.378203.234001.94470K562CCDC124
TRAPPC1ENSG00000170043.7530.74580404.331200.392402.308101.35990K562DDX3X
TRAPPC1ENSG00000170043.7780.47290501.924200.636806.112004.81920K562FIP1L1
TRAPPC1ENSG00000170043.7272.93810427.73680-0.648102.747501.83590K562FTO
TRAPPC1ENSG00000170043.7171.93830330.76920-0.943905.927204.80500K562G3BP2
TRAPPC1ENSG00000170043.71047.88900793.266100.401503.295702.47330K562GRSF1
TRAPPC1ENSG00000170043.7870.25200680.483100.354802.323301.58970K562HSPD1
TRAPPC1ENSG00000170043.7952.20670690.300700.463904.421903.34560K562KIF1C
TRAPPC1ENSG00000170043.7906.12400660.771400.455503.555202.28810K562MAK16
TRAPPC1ENSG00000170043.71026.57680773.308300.408602.792101.87820K562MBNL1
TRAPPC1ENSG00000170043.7788.14350542.031400.540003.167802.21260K562NAA15
TRAPPC1ENSG00000170043.7186.16190449.54660-1.271905.654602.65170K562NFX1
TRAPPC1ENSG00000170043.7966.34230509.515200.923304.786703.38540K562PABPN1
TRAPPC1ENSG00000170043.7783.95270569.803500.460203.542402.59530K562PPIG
TRAPPC1ENSG00000170043.71360.82900645.100101.076809.982408.99800K562PUS1
TRAPPC1ENSG00000170043.71021.69600628.518900.7008010.290409.17180K562RBM15
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TRAPPC1 is not available on ENCORE database.





15 RBPs can affect the splicing of TRAPPC1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETRAPPC1ENSG00000170043.7chr17-783482378348947834328783446778350487835147-0.073000.000140.00380excludedHepG2U2AF1
SETRAPPC1ENSG00000170043.7chr17-783482378348947834328783446778350487835147-0.065000.000110.01472excludedHepG2PRPF8
SETRAPPC1ENSG00000170043.7chr17-783482378348947834328783446778350487835147-0.115000.000000.00000excludedHepG2U2AF2
SETRAPPC1ENSG00000170043.7chr17-783482378348947834328783446778350487835147-0.130000.000250.02240excludedHepG2FTO
SETRAPPC1ENSG00000170043.7chr17-783482378348947834328783446778350487835147-0.072000.000000.00005excludedHepG2LARP4
SETRAPPC1ENSG00000170043.7chr17-783482378348947834328783446778350487835147-0.058000.000070.00357excludedHepG2SF3A3
SETRAPPC1ENSG00000170043.7chr17-783482378348947834328783446778350487835147-0.087000.000000.00077excludedHepG2SRSF9
A3SSTRAPPC1ENSG00000170043.7chr17-7834328783456978343287834467783482378348940.052000.000000.00000longerK562AQR
RITRAPPC1ENSG00000170043.7chr17-7835073783531778350737835147783525778353170.089000.001600.08607includedHepG2DDX6
RITRAPPC1ENSG00000170043.7chr17-7835073783528078350737835147783525778352800.181000.000010.00217includedHepG2HNRNPL
RITRAPPC1ENSG00000170043.7chr17-783507378353177835073783514778352577835317-0.190000.000160.02248excludedK562TAF15
RITRAPPC1ENSG00000170043.7chr17-7835073783528078350737835147783525778352800.190000.000760.08344includedHepG2PRPF4
RITRAPPC1ENSG00000170043.7chr17-7835073783528078350737835147783525778352800.165000.000040.01431includedHepG2NOL12
RITRAPPC1ENSG00000170043.7chr17-783507378352807835073783514778352577835280-0.133000.000230.00776excludedHepG2SRSF1
RITRAPPC1ENSG00000170043.7chr17-783507378352807835073783514778352577835280-0.156000.001570.03115excludedK562U2AF1
RITRAPPC1ENSG00000170043.7chr17-783507378353177835073783514778352577835317-0.160000.000120.02191excludedK562PUM1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TRAPPC1 is not avaliable on ENCORE database.