TMEM138

General Information

Gene Name : TMEM138
Gene ID : ENSG00000149483.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TMEM138)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TMEM138	ENSG00000149483.11	45.93	56.19	51.06	ENCSR000AEF
HepG2	TMEM138	ENSG00000149483.11	38.24	41.23	39.73	ENCSR985KAT
K562	TMEM138	ENSG00000149483.11	79.06	68.48	73.77	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TMEM138 is not avaliable on ENCORE database.

Proteins bound to RNA

TMEM138 RNA is bound by 18 proteins.

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eCLIP assay for TMEM138 is not avaliable on ENCORE database.

18 proteins are bound to TMEM138 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	61136363	61136459	+	3'-UTR	5.05073	25.82804	HepG2	PCBP2
chr11	61136054	61136101	+	CDS,intron-Distal,intron-Proximal	4.40564	15.43672	HepG2	U2AF2
chr11	61136364	61136464	+	3'-UTR	4.57551	9.31157	K562	PCBP1
chr11	61135461	61135566	+	3'-UTR,CDS,intron-Proximal	4.85606	9.23542	K562	EFTUD2
chr11	61133727	61133818	+	3'-UTR,intron-Distal,intron-Proximal	3.39930	8.81610	K562	PRPF8
chr11	61131771	61131850	+	5'-UTR,intron-Proximal	4.77463	7.71151	HepG2	GRWD1
chr11	61133654	61133720	+	3'-UTR,CDS,intron-Proximal	6.26292	7.70650	HepG2	PRPF8
chr11	61135363	61135449	+	3'-UTR,CDS,intron-Proximal	3.79355	7.58883	K562	AQR
chr11	61129857	61129934	+	5'-UTR,intron-Proximal	4.34673	7.46483	HepG2	PRPF8
chr11	61135399	61135503	+	3'-UTR,CDS,intron-Proximal	3.37303	7.24602	HepG2	GRWD1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 31 entries

eCLIP assay for TMEM138 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TMEM138 is not available on ENCORE database.
78 RBPs can affect the levels of TMEM138.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TMEM138 is not available on ENCORE database.

78 RBPs can affect the gene expression of TMEM138 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TMEM138	ENSG00000149483.7	633.78990	260.58700	1.28210	16.24760	14.70390	HepG2	HNRNPK
TMEM138	ENSG00000149483.7	547.20970	271.86110	1.00910	13.54390	12.44190	HepG2	TAF15
TMEM138	ENSG00000149483.7	643.78120	279.05300	1.20590	12.53310	11.25810	HepG2	MATR3
TMEM138	ENSG00000149483.7	623.59630	285.62380	1.12640	11.72100	10.46000	HepG2	NCBP2
TMEM138	ENSG00000149483.7	565.00370	277.50270	1.02570	9.86210	8.64280	HepG2	MAGOH
TMEM138	ENSG00000149483.7	829.15060	536.69960	0.62740	8.73620	7.92490	HepG2	SSB
TMEM138	ENSG00000149483.7	533.30350	309.72140	0.78390	8.52980	7.67620	HepG2	NELFE
TMEM138	ENSG00000149483.7	400.82400	687.68900	-0.77880	8.40190	7.41210	K562	HNRNPC
TMEM138	ENSG00000149483.7	526.10790	301.38860	0.80360	8.26780	7.27630	HepG2	QKI
TMEM138	ENSG00000149483.7	1071.75840	1707.91210	-0.67230	8.34500	6.92270	K562	PUF60
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 89 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TMEM138 is not available on ENCORE database.

11 RBPs can affect the splicing of TMEM138 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
RI	TMEM138	ENSG00000149483.7	chr11	+	61131723	61131990	61131723	61131787	61131904	61131990	-0.31200	0.00000	0.00012	excluded	K562	RBM15
A5SS	TMEM138	ENSG00000149483.7	chr11	+	61131947	61132084	61131947	61131990	61133516	61134029	0.05300	0.00002	0.00051	longer	K562	AQR
RI	TMEM138	ENSG00000149483.7	chr11	+	61131723	61131990	61131723	61131787	61131904	61131990	0.20800	0.00002	0.00107	included	K562	PTBP1
RI	TMEM138	ENSG00000149483.7	chr11	+	61131723	61131990	61131723	61131787	61131904	61131990	0.26600	0.00007	0.00217	included	K562	FXR1
RI	TMEM138	ENSG00000149483.7	chr11	+	61131723	61131990	61131723	61131787	61131904	61131990	-0.29400	0.00009	0.00187	excluded	K562	UTP18
RI	TMEM138	ENSG00000149483.7	chr11	+	61131723	61131990	61131723	61131787	61131904	61131990	-0.28500	0.00016	0.00280	excluded	K562	AGGF1
SE	TMEM138	ENSG00000149483.7	chr11	+	61131904	61132050	61131723	61131787	61133516	61134029	-0.69100	0.00032	0.05693	excluded	K562	EIF3G
SE	TMEM138	ENSG00000149483.7	chr11	+	61134878	61134997	61133589	61133688	61135394	61135470	0.13500	0.00081	0.01684	included	K562	U2AF2
SE	TMEM138	ENSG00000149483.7	chr11	+	61134878	61134997	61133589	61133688	61135394	61135470	0.10800	0.00124	0.02676	included	K562	U2AF1
RI	TMEM138	ENSG00000149483.7	chr11	+	61131723	61131990	61131723	61131787	61131904	61131990	-0.26200	0.00199	0.01390	excluded	K562	PUS1

Showing 1 to 10 of 12 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TMEM138

General Information

Functions

Localization

Domains (AlphaFold: TMEM138)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TMEM138 is not avaliable on ENCORE database.

18 proteins are bound to TMEM138 RNA:

eCLIP assay for TMEM138 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TMEM138 is not available on ENCORE database.

78 RBPs can affect the gene expression of TMEM138 :

The Knockdown/knockout RNA-Seq assay for TMEM138 is not available on ENCORE database.

11 RBPs can affect the splicing of TMEM138 :

The Knockdown/knockout RNA-Seq assay for TMEM138 is not avaliable on ENCORE database.