STAMBP

General Information

Gene Name       : STAMBP
Gene ID             : ENSG00000124356.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: STAMBP)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878STAMBPENSG00000124356.1568.0352.9360.48ENCSR000AEF
HepG2STAMBPENSG00000124356.1539.3467.9753.66ENCSR985KAT
K562STAMBPENSG00000124356.1542.6245.8144.22ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for STAMBP is not avaliable on ENCORE database.



Proteins bound to RNA
  • STAMBP RNA is bound by 18 proteins.  







eCLIP assay for STAMBP is not avaliable on ENCORE database.





18 proteins are bound to STAMBP RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr27409017074090209+3'-UTR,intron-Distal4.154354.36036HepG2SUGP2
chr27409098974091038+3'-UTR,intron-Distal3.111274.61989HepG2SUGP2
chr27409063374090721+3'-UTR,intron-Distal4.690134.85237K562UPF1
chr27409123274091302+3'-UTR,intron-Distal4.633815.59955HepG2SUGP2
chr27409366174093710+3'-UTR,intron-Distal4.074273.39864HepG2SUGP2
chr27409290074092947+3'-UTR,intron-Distal4.138503.63454HepG2SUGP2
chr27409313274093197+3'-UTR,intron-Distal3.618184.84410HepG2SUGP2
chr27409074174090825+3'-UTR,intron-Distal3.661443.68462HepG2MATR3
chr27405611674056185+5'-UTR,intron-Proximal4.196423.62829K562NCBP2
chr27405609774056209+5'-UTR,intron-Proximal3.239398.09925HepG2NCBP2
chr27405793074058020+5'-UTR,CDS,intron-Proximal4.167237.11475HepG2BUD13
chr27405791674057983+5'-UTR,intron-Proximal4.078503.05889HepG2SF3B4
chr27405641874056567+5'-UTR,intron-Distal,intron-Proximal3.639675.84135HepG2PCBP2
chr27407758674077647+CDS,intron-Proximal3.254043.80299HepG2GRWD1
chr27405808774058181+CDS3.397215.45876HepG2BCLAF1
chr27407463974074796+CDS,intron-Proximal3.5073312.67896HepG2BCLAF1
chr27405810174058187+CDS,intron-Proximal3.138083.67697K562YBX3
chr27407237074072392+CDS,intron-Proximal4.031833.11168K562ZNF622
chr27408721374087276+CDS4.057414.28220HepG2GRWD1
chr27407449874074590+CDS,intron-Proximal3.8753410.97171HepG2BUD13
chr27407229674072424+CDS,intron-Proximal3.354477.38298HepG2AQR
chr27407451374074581+CDS,intron-Proximal4.605659.14010HepG2BCLAF1
chr27407451074074600+CDS,intron-Proximal3.170818.98598K562UCHL5
chr27407452074074796+CDS,intron-Proximal3.217679.15494K562ZNF800
chr27407234774072390+CDS,intron-Proximal3.306924.74886HepG2BCLAF1
chr27407467974074743+CDS,intron-Proximal5.230869.55253K562LIN28B
chr27407449774074606+CDS,intron-Proximal3.663769.82901HepG2AQR
chr27407462474074845+CDS,intron-Distal,intron-Proximal3.070614.45218HepG2ZNF800
chr27405805674058184+CDS3.925317.06029HepG2GRWD1
chr27407475074074856+CDS,intron-Distal,intron-Proximal3.463087.70405K562ZNF622
chr27407642774076496+CDS,intron-Proximal4.176957.33504K562SF3B4
chr27407761774077689+CDS,intron-Proximal3.439076.82513HepG2PRPF8
chr27407199774072062+CDS,intron-Proximal4.614144.96013K562PRPF8
chr27407468274074768+CDS,intron-Proximal3.463676.18332HepG2GRWD1
chr27408724974087330+CDS,intron-Proximal4.490058.78209HepG2PRPF8
chr27407460074074689+CDS4.0986211.10006K562UCHL5
chr27407201574072060+intron-Proximal4.514316.48405K562AQR
chr27405821374058267+intron-Proximal5.339685.83705HepG2RBM22
chr27405820974058261+intron-Proximal3.903383.71735K562TIA1
chr27407640274076485+intron-Proximal5.283197.45449HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for STAMBP is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for STAMBP is not available on ENCORE database.

  • 59 RBPs can affect the levels of STAMBP.  








The Knockdown/knockout RNA-Seq assay for STAMBP is not available on ENCORE database.





59 RBPs can affect the gene expression of STAMBP :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
STAMBPENSG00000124356.112300.151301678.927700.454103.432802.84900HepG2AKAP1
STAMBPENSG00000124356.111720.001501424.966600.271401.971001.45830HepG2BOP1
STAMBPENSG00000124356.11455.033001352.89680-1.5720029.2669027.29940HepG2CALR
STAMBPENSG00000124356.11975.808801129.83540-0.211402.001201.42340HepG2CKAP4
STAMBPENSG00000124356.11815.334401139.24140-0.482602.419601.70730HepG2CNOT7
STAMBPENSG00000124356.11996.928001308.20410-0.392003.021302.30710HepG2CPSF6
STAMBPENSG00000124356.111316.585901669.76960-0.342805.547304.54750HepG2DAZAP1
STAMBPENSG00000124356.111249.323701608.30750-0.364402.503401.90580HepG2DDX3X
STAMBPENSG00000124356.111411.980501144.992500.302301.969201.30520HepG2DDX55
STAMBPENSG00000124356.11855.730501381.51810-0.691006.310205.40720HepG2DDX6
STAMBPENSG00000124356.111318.968601081.233400.286603.007902.30550HepG2DKC1
STAMBPENSG00000124356.11734.091401042.73120-0.506303.320302.09780HepG2AGO1
STAMBPENSG00000124356.111947.941901467.773000.408202.890102.23730HepG2EIF4A3
STAMBPENSG00000124356.11756.978101104.29770-0.544806.046004.80990HepG2EWSR1
STAMBPENSG00000124356.11851.754201482.97080-0.800009.044307.92900HepG2GPKOW
STAMBPENSG00000124356.11857.251901078.92980-0.331803.675802.56210HepG2HDGF
STAMBPENSG00000124356.111738.583401390.946600.321702.430601.77400HepG2HNRNPK
STAMBPENSG00000124356.111551.496201254.613400.306303.837003.13350HepG2HNRNPU
STAMBPENSG00000124356.111116.402701489.66670-0.416102.806102.17120HepG2MATR3
STAMBPENSG00000124356.111530.368201261.051000.279202.243501.51170HepG2MSI2
STAMBPENSG00000124356.111973.115601655.736400.252902.316901.61940HepG2NOL12
STAMBPENSG00000124356.111058.113101357.94930-0.359902.389201.71400HepG2PABPC4
STAMBPENSG00000124356.111016.390401404.15620-0.466207.388506.47540HepG2PCBP1
STAMBPENSG00000124356.111070.677201580.52610-0.561907.075906.17880HepG2PUF60
STAMBPENSG00000124356.111008.643701676.56430-0.7331013.4219012.01340HepG2PUM2
STAMBPENSG00000124356.111471.886801151.126000.354505.123204.33160HepG2PUS1
STAMBPENSG00000124356.111882.455301547.423900.282602.745802.12330HepG2QKI
STAMBPENSG00000124356.112057.465501690.666200.283203.273002.72260HepG2RBM22
STAMBPENSG00000124356.112056.552101619.984000.344102.706302.02860HepG2RPLP0
STAMBPENSG00000124356.111141.86230906.918400.332202.617102.01860HepG2RPS19
STAMBPENSG00000124356.111099.071001443.63670-0.393402.126901.53410HepG2SF3A3
STAMBPENSG00000124356.111095.993801400.80410-0.354002.774202.06620HepG2SF3B1
STAMBPENSG00000124356.112140.183401558.636100.457402.012501.35060HepG2SNRNP70
STAMBPENSG00000124356.111631.907401909.56410-0.226702.617702.12510HepG2SRFBP1
STAMBPENSG00000124356.11990.978901263.17420-0.350104.476503.80590HepG2SRSF9
STAMBPENSG00000124356.112010.999301774.755600.180201.847301.32050HepG2SUCLG1
STAMBPENSG00000124356.111426.807501139.904100.323802.234001.61740HepG2SUPV3L1
STAMBPENSG00000124356.111056.412101379.35400-0.384803.074202.31520HepG2TARDBP
STAMBPENSG00000124356.11866.146401219.15150-0.493205.874705.19770HepG2TIAL1
STAMBPENSG00000124356.112255.515901332.834700.7589011.120909.83870HepG2U2AF1
STAMBPENSG00000124356.111098.759201280.28540-0.220602.105301.48160HepG2UPF1
STAMBPENSG00000124356.111748.570901408.068400.312405.107004.42060HepG2ZNF622
STAMBPENSG00000124356.111284.730001552.27880-0.272901.999401.44220K562AKAP8L
STAMBPENSG00000124356.111420.564801852.40130-0.382903.419402.78170K562AQR
STAMBPENSG00000124356.111168.372101408.79860-0.270001.981601.30940K562CPSF6
STAMBPENSG00000124356.11646.07560917.25720-0.505604.488803.11470K562DDX3X
STAMBPENSG00000124356.112165.354501688.394700.358905.603804.72450K562DDX47
STAMBPENSG00000124356.11523.05100960.68610-0.877109.688306.78990K562DDX51
STAMBPENSG00000124356.11675.74290889.63120-0.396702.591401.71120K562EFTUD2
STAMBPENSG00000124356.11903.169001214.83280-0.427703.208802.21810K562FTO
STAMBPENSG00000124356.111091.36170858.188500.346703.159301.71680K562FUS
STAMBPENSG00000124356.11974.266001345.09440-0.465303.961103.01580K562GPKOW
STAMBPENSG00000124356.111400.214701694.33270-0.275102.112001.44570K562GRSF1
STAMBPENSG00000124356.11989.669801223.63410-0.306202.496201.47580K562HNRNPA1
STAMBPENSG00000124356.112275.804601248.006400.8667013.1157010.40180K562HNRNPK
STAMBPENSG00000124356.11961.026301310.57440-0.447604.740303.49860K562MATR3
STAMBPENSG00000124356.11888.318201168.45650-0.395503.364502.28690K562PCBP2
STAMBPENSG00000124356.11939.999401275.89630-0.440804.758303.90970K562PTBP1
STAMBPENSG00000124356.111967.365802486.09030-0.337604.562503.32110K562PUM2
STAMBPENSG00000124356.111108.06990881.901900.329302.054201.35530K562RPS19
STAMBPENSG00000124356.111126.001401388.77940-0.302603.120402.25480K562SF3A3
STAMBPENSG00000124356.11924.488701250.80510-0.436104.442803.55090K562SRSF1
STAMBPENSG00000124356.11984.087801221.09790-0.311302.555401.77270K562TIA1
STAMBPENSG00000124356.11665.86940893.83960-0.424802.781801.84250K562TIAL1
STAMBPENSG00000124356.111573.066601037.856700.599905.615403.94070K562U2AF1
STAMBPENSG00000124356.111667.807401071.849900.6377010.454108.89350K562U2AF2
STAMBPENSG00000124356.111017.476201702.01090-0.742208.366906.38020K562UTP3
STAMBPENSG00000124356.111701.146101327.875300.357305.642904.47730K562WDR43
STAMBPENSG00000124356.111675.940302086.72000-0.316302.713701.86010K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for STAMBP is not available on ENCORE database.





4 RBPs can affect the splicing of STAMBP :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESTAMBPENSG00000124356.11chr2+740893297408943174087203740872787409726974097479-0.095000.001780.03312excludedHepG2U2AF1
SESTAMBPENSG00000124356.11chr2+7405653174056637740560937405612374057971740580250.151000.000400.01865includedK562HNRNPU
SESTAMBPENSG00000124356.11chr2+7408766074087716740871787408727874089329740899330.073000.000020.01476includedHepG2DROSHA
A3SSSTAMBPENSG00000124356.11chr2+7408715774087278740871787408727874086354740864930.083000.000000.00000longerK562AQR
A5SSSTAMBPENSG00000124356.11chr2+7407646574076705740764657407661474077502740775890.079000.000000.00002longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for STAMBP is not avaliable on ENCORE database.