SLC15A4

General Information

Gene Name       : SLC15A4
Gene ID             : ENSG00000139370.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SLC15A4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SLC15A4ENSG00000139370.1128.3024.7526.52ENCSR000AEF
HepG2SLC15A4ENSG00000139370.117.7810.949.36ENCSR985KAT
K562SLC15A4ENSG00000139370.115.846.806.32ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SLC15A4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SLC15A4 RNA is bound by 6 proteins.  







eCLIP assay for SLC15A4 is not avaliable on ENCORE database.





6 proteins are bound to SLC15A4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr12129299563129299637-3'-UTR,CDS,intron-Distal,intron-Proximal3.796324.77518HepG2U2AF2
chr12129285353129285401-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal5.066314.86944K562AQR
chr12129293284129293358-5'-UTR,CDS,intron-Distal,intron-Proximal4.724518.17589HepG2PRPF8
chr12129308297129308514-5'-UTR,CDS,intron-Distal,intron-Proximal3.4095714.49412HepG2DDX3X
chr12129288039129288101-intron-Distal3.426893.42785HepG2HNRNPM
chr12129292901129292958-intron-Distal3.568646.33688HepG2QKI
chr12129303003129303097-intron-Distal4.856887.15660HepG2HNRNPM
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SLC15A4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SLC15A4 is not available on ENCORE database.

  • 41 RBPs can affect the levels of SLC15A4.  








The Knockdown/knockout RNA-Seq assay for SLC15A4 is not available on ENCORE database.





41 RBPs can affect the gene expression of SLC15A4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SLC15A4ENSG00000139370.6562.39160462.137100.283201.978301.44800HepG2ACO1
SLC15A4ENSG00000139370.6569.83590464.330500.295302.028901.35870HepG2AKAP8L
SLC15A4ENSG00000139370.6445.00400231.933300.940008.490107.51120HepG2BOP1
SLC15A4ENSG00000139370.6898.23020544.369000.7224011.4344010.30260HepG2CELF1
SLC15A4ENSG00000139370.6464.92010677.17160-0.542503.665002.95530HepG2DDX3X
SLC15A4ENSG00000139370.6464.52110345.566400.426702.068701.38980HepG2DDX55
SLC15A4ENSG00000139370.6400.90110241.795800.729403.215402.16320HepG2DDX59
SLC15A4ENSG00000139370.6315.65620442.14690-0.486203.529602.77940HepG2DKC1
SLC15A4ENSG00000139370.6453.25070338.059900.422902.155001.52600HepG2DNAJC21
SLC15A4ENSG00000139370.6230.90510335.07900-0.537203.954303.20220HepG2DNAJC2
SLC15A4ENSG00000139370.6817.49540621.097000.396303.711003.03230HepG2ETF1
SLC15A4ENSG00000139370.6469.52600623.54640-0.409302.318001.68250HepG2FXR1
SLC15A4ENSG00000139370.6216.10840379.63310-0.812905.722004.75250HepG2HNRNPC
SLC15A4ENSG00000139370.6342.69380230.348500.573002.971002.32190HepG2HNRNPLL
SLC15A4ENSG00000139370.6373.34490265.618400.491102.571301.65290HepG2HNRNPM
SLC15A4ENSG00000139370.6220.36970377.12310-0.775107.427906.47190HepG2HNRNPU
SLC15A4ENSG00000139370.6403.70820601.60170-0.575506.181105.32930HepG2PCBP1
SLC15A4ENSG00000139370.6491.86480612.15340-0.315602.126801.63500HepG2PTBP1
SLC15A4ENSG00000139370.6720.57500554.040400.379102.647002.06180HepG2PUF60
SLC15A4ENSG00000139370.6809.10620587.711500.461104.272703.45070HepG2PUM2
SLC15A4ENSG00000139370.6442.37760662.97470-0.583705.679804.83170HepG2QKI
SLC15A4ENSG00000139370.6706.53020519.123700.444603.885203.29890HepG2RBM22
SLC15A4ENSG00000139370.6495.76860681.26700-0.458604.098303.46290HepG2NELFE
SLC15A4ENSG00000139370.6489.58690634.50940-0.374102.974502.33800HepG2RECQL
SLC15A4ENSG00000139370.6634.06980430.168000.559604.562703.71510HepG2RPLP0
SLC15A4ENSG00000139370.6360.74820228.001800.661804.106903.26370HepG2SF3B1
SLC15A4ENSG00000139370.6451.82890637.32860-0.496304.670003.93270HepG2SF3B4
SLC15A4ENSG00000139370.6845.46420586.333900.527906.830806.14110HepG2SRFBP1
SLC15A4ENSG00000139370.6405.75610665.23390-0.713208.773308.03760HepG2SRSF1
SLC15A4ENSG00000139370.6376.57870245.324300.618202.869301.84780HepG2SRSF3
SLC15A4ENSG00000139370.6718.58660547.042900.393403.712703.00780HepG2SRSF5
SLC15A4ENSG00000139370.6902.38050541.204000.7375013.1746012.12890HepG2SRSF9
SLC15A4ENSG00000139370.6381.97880259.917700.555303.287402.26810HepG2SUPT6H
SLC15A4ENSG00000139370.6465.93760344.041400.437502.362601.73150HepG2SUPV3L1
SLC15A4ENSG00000139370.6312.75610224.508100.478202.239101.57710HepG2TARDBP
SLC15A4ENSG00000139370.6240.94780463.75450-0.944604.315003.00270HepG2TBRG4
SLC15A4ENSG00000139370.6476.13180329.357000.531602.801102.16910HepG2U2AF1
SLC15A4ENSG00000139370.6250.52760343.17460-0.454002.733301.69060HepG2UTP18
SLC15A4ENSG00000139370.6490.58210367.204600.417803.541502.94380HepG2ZNF622
SLC15A4ENSG00000139370.6353.09300242.819300.540103.143302.27120K562EIF4A3
SLC15A4ENSG00000139370.6151.36920229.49430-0.600402.642202.05670K562HNRNPC
SLC15A4ENSG00000139370.6388.27690298.639600.378602.131501.53590K562PTBP1
SLC15A4ENSG00000139370.6797.41880548.702700.539204.342403.32600K562PUF60
SLC15A4ENSG00000139370.6741.58650583.652600.345402.395901.40820K562PUM1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SLC15A4 is not available on ENCORE database.





4 RBPs can affect the splicing of SLC15A4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESLC15A4ENSG00000139370.6chr12-1292936231292936891292933501292935011292939401292940550.052000.002650.02767includedK562AQR
SESLC15A4ENSG00000139370.6chr12-129294487129294656129293940129294018129299319129299615-0.204000.001310.01537excludedK562AQR
SESLC15A4ENSG00000139370.6chr12-129294487129294656129293940129294018129299319129299615-0.358000.000000.00007excludedK562PUS1
SESLC15A4ENSG00000139370.6chr12-129294487129294656129293940129294018129299319129299615-0.370000.000090.00511excludedK562UTP18
SESLC15A4ENSG00000139370.6chr12-129294487129294656129293940129294018129299319129299615-0.352000.000800.01608excludedK562HNRNPC
A3SSSLC15A4ENSG00000139370.6chr12-1292838031292840311292838031292839621292853981292855540.111000.001780.01163longerK562AQR
A3SSSLC15A4ENSG00000139370.6chr12-1292933501292935571292933501292935011292939401292940180.076000.001020.00704longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SLC15A4 is not avaliable on ENCORE database.