SELK

General Information

Gene Name       : SELK
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SELK)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SELK is not avaliable on ENCORE database.



Proteins bound to RNA
  • SELK RNA is bound by 6 proteins.  







eCLIP assay for SELK is not avaliable on ENCORE database.





6 proteins are bound to SELK RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr35391985253919902-3'-UTR,CDS,intron-Distal,intron-Proximal3.727093.57831HepG2SND1
chr35391985053919905-3'-UTR,CDS,intron-Distal,intron-Proximal4.113713.02572K562SND1
chr35391924353919311-3'-UTR,intron-Distal,intron-Proximal4.587967.90397K562PABPC4
chr35392579353925875-5'-UTR,CDS,intron-Distal4.038959.36623K562DDX3X
chr35392579453925875-5'-UTR,CDS,intron-Distal3.142866.72797HepG2DDX3X
chr35392579153925856-5'-UTR,CDS,intron-Distal3.998563.56019HepG2GRWD1
chr35392087753920948-CDS,intron-Distal,intron-Proximal3.792394.20387K562ZNF622
chr35392246653922521-CDS,intron-Distal,intron-Proximal3.233433.26275K562BUD13
chr35392087953920965-CDS,intron-Distal,intron-Proximal3.042293.00343HepG2GRWD1
chr35392245853922511-CDS,intron-Distal,intron-Proximal3.212026.73521K562DDX3X
chr35392246253922510-CDS,intron-Distal3.302115.04943K562ZNF622
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SELK is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SELK is not available on ENCORE database.

  • 61 RBPs can affect the levels of SELK.  








The Knockdown/knockout RNA-Seq assay for SELK is not available on ENCORE database.





61 RBPs can affect the gene expression of SELK :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SELKENSG00000113811.6285.72080168.334900.763204.954003.95870HepG2CALR
SELKENSG00000113811.6150.43120323.82110-1.1061012.0921010.90060HepG2CKAP4
SELKENSG00000113811.6123.96980368.08610-1.5701012.194009.81530HepG2DDX27
SELKENSG00000113811.6945.23160665.592800.505903.733803.01780HepG2DDX3X
SELKENSG00000113811.6269.58220393.40040-0.545302.602001.84960HepG2DDX55
SELKENSG00000113811.6412.95840549.64710-0.412502.091001.56770HepG2EIF2S1
SELKENSG00000113811.6509.17390629.69230-0.306502.135401.38440HepG2EIF4G1
SELKENSG00000113811.6455.19070612.79450-0.428902.418101.76930HepG2FXR1
SELKENSG00000113811.6336.83440603.47590-0.841307.555906.07160HepG2G3BP2
SELKENSG00000113811.6239.56040339.55940-0.503302.341701.40780HepG2GNB2L1
SELKENSG00000113811.6262.37730586.57080-1.1607017.9572015.99300HepG2HNRNPA2B1
SELKENSG00000113811.6196.48240273.83930-0.478902.015401.41330HepG2HNRNPC
SELKENSG00000113811.6195.91650272.02910-0.473502.659002.06380HepG2HNRNPU
SELKENSG00000113811.6408.96240581.23240-0.507102.523101.57460HepG2KHSRP
SELKENSG00000113811.6116.98680174.34060-0.575602.243801.51190HepG2MSI2
SELKENSG00000113811.6178.44720361.25550-1.017504.946803.46290HepG2NONO
SELKENSG00000113811.6409.66660531.74210-0.376302.865702.25160HepG2PCBP1
SELKENSG00000113811.691.31990163.64480-0.841603.890002.42580HepG2PKM
SELKENSG00000113811.6397.98670541.05880-0.443103.678903.06760HepG2PTBP1
SELKENSG00000113811.6457.48940604.13800-0.401101.847401.34670HepG2PUF60
SELKENSG00000113811.6505.00880641.33670-0.344803.007802.39550HepG2PUM1
SELKENSG00000113811.6556.64890367.436300.599202.569301.88890HepG2RAVER1
SELKENSG00000113811.6713.11730491.157400.537905.435804.77080HepG2RBM22
SELKENSG00000113811.6340.86450602.15370-0.8209010.144309.22920HepG2NELFE
SELKENSG00000113811.6381.41160560.81130-0.556205.262904.44680HepG2RECQL
SELKENSG00000113811.6198.12450297.07070-0.584402.909402.21130HepG2RPLP0
SELKENSG00000113811.6100.27170192.54740-0.941304.973504.17660HepG2RPS19
SELKENSG00000113811.6263.56840467.07970-0.825505.451904.32170HepG2RPS3A
SELKENSG00000113811.6340.42910242.255700.490703.290502.59840HepG2SAFB2
SELKENSG00000113811.6357.67110211.959100.754701.968901.39810HepG2SF3A3
SELKENSG00000113811.6413.86960563.32750-0.444803.668303.00090HepG2SF3B4
SELKENSG00000113811.6396.90230579.31030-0.545605.554104.61810HepG2SLBP
SELKENSG00000113811.684.45100209.29510-1.309403.853102.24390HepG2SNRNP200
SELKENSG00000113811.6810.35220554.739600.546606.814406.12540HepG2SRFBP1
SELKENSG00000113811.6390.27470596.51930-0.612106.463305.56130HepG2SRSF5
SELKENSG00000113811.6324.30430478.35220-0.560705.248604.53120HepG2SRSF9
SELKENSG00000113811.6495.95070678.38880-0.451904.490303.73340HepG2SUCLG1
SELKENSG00000113811.6182.58680264.33820-0.533802.808702.30530HepG2TIAL1
SELKENSG00000113811.6380.78410590.24600-0.632305.393104.12580HepG2TUFM
SELKENSG00000113811.6107.42870243.35080-1.179702.959901.93650HepG2U2AF2
SELKENSG00000113811.6466.57740624.78500-0.421202.029401.31850HepG2UBE2L3
SELKENSG00000113811.6267.29020193.213700.468102.402701.41510HepG2UTP18
SELKENSG00000113811.6294.79720206.736900.511803.285602.70490HepG2ZNF622
SELKENSG00000113811.6245.37730367.09490-0.581202.850501.53460HepG2ZRANB2
SELKENSG00000113811.6401.30830297.659300.430903.031102.44090K562AGGF1
SELKENSG00000113811.6454.03690327.125300.472903.135702.07530K562AKAP8
SELKENSG00000113811.6481.71010309.738500.637005.301504.38160K562AKAP8L
SELKENSG00000113811.6420.20900325.010100.370502.304401.47830K562ATP5C1
SELKENSG00000113811.638.2489089.92260-1.233304.096402.76360K562CCAR1
SELKENSG00000113811.642.93030100.66380-1.229504.600502.81670K562DHX30
SELKENSG00000113811.6423.44860333.235100.345502.122601.36690K562DKC1
SELKENSG00000113811.6235.55650310.71810-0.399502.031301.34100K562EIF3G
SELKENSG00000113811.6235.40480134.191600.810703.833202.82390K562FIP1L1
SELKENSG00000113811.6203.19930110.403200.880003.289702.26840K562HNRNPM
SELKENSG00000113811.6304.47800181.895100.743103.012702.18380K562HSPD1
SELKENSG00000113811.6472.84080328.673200.524604.011102.99320K562KIF1C
SELKENSG00000113811.639.1970095.77700-1.288903.684202.58880K562KRR1
SELKENSG00000113811.6436.42160244.557300.835506.439805.29620K562PRPF8
SELKENSG00000113811.6385.34130494.67390-0.360302.237501.63050K562PTBP1
SELKENSG00000113811.6703.60560541.187800.378502.667201.86570K562PUF60
SELKENSG00000113811.6509.37810307.100600.729905.948105.18940K562PUS1
SELKENSG00000113811.6425.73090299.285500.508302.714602.12610K562RBM15
SELKENSG00000113811.6349.36360490.82720-0.490503.086802.33820K562TARDBP
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SELK is not available on ENCORE database.





1 RBPs can affect the splicing of SELK :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSSELKENSG00000113811.6chr3-5392087753921009539208775392096153922419539225540.138000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SELK is not avaliable on ENCORE database.