PHF7

General Information

Gene Name       : PHF7
Gene ID             : ENSG00000010318.20
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PHF7)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PHF7ENSG00000010318.205.225.105.16ENCSR000AEF
HepG2PHF7ENSG00000010318.204.847.566.20ENCSR985KAT
K562PHF7ENSG00000010318.2013.2912.3112.80ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
PHF7Ribo-STAMP-293TshRNAPHF7-BGRSLV04-35,PHF7-BGRSLV04-36NT-BGRSLV04-1,NT-BGRSLV04-2,SubmittedENCORE2
PHF7Ribo-STAMP-293TshRNABGRSDLV02-49,BGRSDLV02-50BGRSDLV02-1,BGRSDLV02-2SubmittedENCORE2
PHF7Ribo-STAMP-293TshRNAPHF7-BGRSDLV02-51dox,PHF7-BGRSDLV02-52doxPHF7-BGRSDLV02-49,PHF7-BGRSDLV02-50,SubmittedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PHF7 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PHF7 RNA is bound by 8 proteins.  







eCLIP assay for PHF7 is not avaliable on ENCORE database.





8 proteins are bound to PHF7 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr35244513552445255+5'-UTR3.556584.48818HepG2GRWD1
chr35244472852444787+5'-UTR4.206103.46958K562YBX3
chr35244467352444728+5'-UTR4.020923.46958K562YBX3
chr35244502752445089+5'-UTR5.000634.11950K562DDX3X
chr35244505852445119+5'-UTR4.002193.73331K562RBM15
chr35245114952451251+intron-Distal3.264036.04536K562KHSRP
chr35244963352449846+intron-Distal3.4530311.46699K562KHSRP
chr35245169052451752+intron-Distal4.240315.81202K562PUM2
chr35245134052451394+intron-Distal3.095833.31830K562KHSRP
chr35244968952449843+intron-Distal3.830184.98826K562RBFOX2
chr35245163852451683+intron-Distal3.477584.98593K562KHSRP
chr35244700552447080+intron-Distal,intron-Proximal4.045393.12843K562PRPF8
chr35244527252445342+intron-Proximal4.821505.85529K562RBM15
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PHF7 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PHF7 is not available on ENCORE database.

  • 48 RBPs can affect the levels of PHF7.  








The Knockdown/knockout RNA-Seq assay for PHF7 is not available on ENCORE database.





48 RBPs can affect the gene expression of PHF7 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PHF7ENSG00000010318.15129.8837070.826400.874803.055002.33700HepG2CPSF6
PHF7ENSG00000010318.15204.95420116.157300.819103.586202.33100HepG2CPSF7
PHF7ENSG00000010318.1589.65580138.19570-0.624201.868301.34370HepG2DDX3X
PHF7ENSG00000010318.1559.14390107.01620-0.855502.562801.44080HepG2EIF2S2
PHF7ENSG00000010318.15208.76520126.114800.727003.112302.43540HepG2EIF4A3
PHF7ENSG00000010318.1596.57760147.59470-0.611902.060901.35010HepG2EIF4G2
PHF7ENSG00000010318.1544.1175093.08870-1.077303.629102.67270HepG2EWSR1
PHF7ENSG00000010318.15123.5375076.618000.689101.951901.41480HepG2HNRNPLL
PHF7ENSG00000010318.1557.3996098.28140-0.775902.243801.38660HepG2HNRNPM
PHF7ENSG00000010318.15136.7100078.414100.801803.057502.29840HepG2IGF2BP1
PHF7ENSG00000010318.1543.03690110.81370-1.364506.063405.31600HepG2PTBP1
PHF7ENSG00000010318.1536.58720147.83180-2.0145012.0714010.94560HepG2PUF60
PHF7ENSG00000010318.1577.61010122.95820-0.663901.903501.45260HepG2RBM22
PHF7ENSG00000010318.1569.13250108.92780-0.655901.908901.33930HepG2RBM25
PHF7ENSG00000010318.15186.1863085.794101.117705.954705.00930HepG2RPLP0
PHF7ENSG00000010318.1541.65490157.02580-1.9144011.4416010.00560HepG2SF3A3
PHF7ENSG00000010318.1546.40950120.43020-1.375705.951305.32310HepG2SRSF1
PHF7ENSG00000010318.1577.49660145.95990-0.913404.166203.42600HepG2SRSF5
PHF7ENSG00000010318.1598.38380165.99870-0.754703.472902.79110HepG2SUCLG1
PHF7ENSG00000010318.15178.00040108.234100.717603.204702.60750HepG2TAF15
PHF7ENSG00000010318.1554.55510121.87320-1.159603.163002.49440HepG2U2AF1
PHF7ENSG00000010318.1537.04820113.70430-1.617803.383302.28800HepG2U2AF2
PHF7ENSG00000010318.1585.6268038.373601.157803.856502.96130HepG2UCHL5
PHF7ENSG00000010318.1593.83980139.25860-0.569501.992301.38310HepG2UPF1
PHF7ENSG00000010318.15156.06900310.38850-0.991908.443907.52510K562AGGF1
PHF7ENSG00000010318.15228.17870341.03630-0.579803.664602.49610K562AKAP8
PHF7ENSG00000010318.15161.14020322.96500-1.003108.052006.88150K562AKAP8L
PHF7ENSG00000010318.15189.11680267.22170-0.498802.025501.50810K562AQR
PHF7ENSG00000010318.15522.73130233.862401.1603014.4011012.57660K562CPSF6
PHF7ENSG00000010318.15288.70240380.23690-0.397302.522201.89580K562DDX47
PHF7ENSG00000010318.15226.54340347.58540-0.617604.702603.51190K562DKC1
PHF7ENSG00000010318.15298.32240216.912400.459702.163301.41140K562FIP1L1
PHF7ENSG00000010318.15179.56760321.93990-0.842303.061401.76080K562HNRNPA2B1
PHF7ENSG00000010318.15213.84630342.77560-0.680704.110603.07840K562KIF1C
PHF7ENSG00000010318.15226.51690328.09710-0.534502.583401.55780K562MAK16
PHF7ENSG00000010318.15258.07560383.99120-0.573303.420402.39140K562MBNL1
PHF7ENSG00000010318.15155.09960269.14750-0.795203.655202.60830K562NAA15
PHF7ENSG00000010318.15170.11200281.72570-0.727802.276001.39530K562PABPN1
PHF7ENSG00000010318.15107.59130202.36120-0.911404.697803.41550K562PCBP2
PHF7ENSG00000010318.15122.32030183.52420-0.585302.436001.68710K562POLR2G
PHF7ENSG00000010318.1571.44570161.41740-1.175905.133404.11150K562PRPF8
PHF7ENSG00000010318.15118.70290220.98510-0.896605.797804.86520K562PTBP1
PHF7ENSG00000010318.15155.64300320.35190-1.041407.166606.33880K562PUS1
PHF7ENSG00000010318.15143.39780312.08560-1.121909.981208.88170K562RBM15
PHF7ENSG00000010318.15150.15550211.86380-0.496702.084501.36030K562RBM22
PHF7ENSG00000010318.1598.22870164.44760-0.743402.395101.63710K562RPS19
PHF7ENSG00000010318.15115.13840257.71420-1.162404.030402.50150K562SF1
PHF7ENSG00000010318.1568.84470166.42530-1.273507.833606.35260K562SF3B4
PHF7ENSG00000010318.15151.57380295.86190-0.964903.412401.99300K562SNRNP200
PHF7ENSG00000010318.15130.89340216.64610-0.726903.661702.85430K562SRSF1
PHF7ENSG00000010318.15150.92410219.24470-0.538702.300701.65230K562TARDBP
PHF7ENSG00000010318.1590.18460155.16670-0.782902.576501.52540K562U2AF1
PHF7ENSG00000010318.1573.41450160.20570-1.125806.064504.88000K562U2AF2
PHF7ENSG00000010318.15464.23780325.258700.513204.196203.32920K562UPF1
PHF7ENSG00000010318.15192.81010324.74350-0.752102.917001.58070K562UTP18
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PHF7 is not available on ENCORE database.





3 RBPs can affect the splicing of PHF7 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPHF7ENSG00000010318.15chr3+524480115244806452446826524469365244851152448603-0.105000.002840.03355excludedHepG2U2AF2
RIPHF7ENSG00000010318.15chr3+5245566352456897524556635245577052456775524568970.599000.001650.02939includedHepG2G3BP1
RIPHF7ENSG00000010318.15chr3+5245566352456897524556635245577052456775524568970.591000.002520.04728includedHepG2KHSRP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PHF7 is not avaliable on ENCORE database.