NUFIP1

General Information

Gene Name       : NUFIP1
Gene ID             : ENSG00000083635.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NUFIP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NUFIP1ENSG00000083635.76.967.417.19ENCSR000AEF
HepG2NUFIP1ENSG00000083635.75.889.337.61ENCSR985KAT
K562NUFIP1ENSG00000083635.76.286.506.39ENCSR000AEO

Assays

1 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
knockdown followed by RNA-seq NUFIP1-BGRSLV04-RS293NUFIP1Ribo-STAMP-293TReleased   shRNAKD% = ,






  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
NUFIP1Ribo-STAMP-293TshRNANUFIP1-BGRSLV04-27,NUFIP1-BGRSLV04-28NT-BGRSLV04-1,NT-BGRSLV04-2,ReleasedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NUFIP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NUFIP1 RNA is bound by 2 proteins.  







eCLIP assay for NUFIP1 is not avaliable on ENCORE database.





2 proteins are bound to NUFIP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr134552392745523991-CDS,intron-Distal,intron-Proximal3.969143.02457HepG2BCLAF1
chr134555040045550481-intron-Distal5.185565.39854K562PTBP1
chr134555040345550480-intron-Distal3.435106.55166HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NUFIP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NUFIP1 is not available on ENCORE database.

  • 60 RBPs can affect the levels of NUFIP1.  








The Knockdown/knockout RNA-Seq assay for NUFIP1 is not available on ENCORE database.





60 RBPs can affect the gene expression of NUFIP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NUFIP1ENSG00000083635.7384.25220519.73010-0.435703.375402.63030HepG2AUH
NUFIP1ENSG00000083635.7137.13510247.89580-0.854104.279403.18370HepG2BCLAF1
NUFIP1ENSG00000083635.7430.93940561.78970-0.382502.170901.63570HepG2BOP1
NUFIP1ENSG00000083635.7411.86180563.68920-0.452702.180901.32380HepG2CCAR1
NUFIP1ENSG00000083635.7223.60360515.76290-1.2058012.9521011.58450HepG2CPSF6
NUFIP1ENSG00000083635.7293.60350428.19180-0.544404.583603.66620HepG2DAZAP1
NUFIP1ENSG00000083635.7333.44210258.795500.365502.212901.46160HepG2DDX19B
NUFIP1ENSG00000083635.7206.69310346.19530-0.744103.968903.23970HepG2DDX6
NUFIP1ENSG00000083635.7125.32970332.73240-1.4086011.9483010.77070HepG2EIF2S1
NUFIP1ENSG00000083635.7483.19390596.72570-0.304502.045901.51210HepG2ETF1
NUFIP1ENSG00000083635.7221.47610344.16900-0.636003.477002.73520HepG2G3BP1
NUFIP1ENSG00000083635.7349.17250584.68300-0.743705.521004.63810HepG2GPKOW
NUFIP1ENSG00000083635.7172.22200261.53980-0.602802.708602.02220HepG2HNRNPC
NUFIP1ENSG00000083635.7332.58060426.58920-0.359102.194001.54980HepG2HNRNPF
NUFIP1ENSG00000083635.7284.14010390.04020-0.457003.252802.52710HepG2HNRNPL
NUFIP1ENSG00000083635.7402.65730557.97150-0.470602.758102.12950HepG2HNRNPLL
NUFIP1ENSG00000083635.7291.99560420.06960-0.524703.680902.85620HepG2IGF2BP1
NUFIP1ENSG00000083635.7506.69230373.264200.440802.109301.55390HepG2MATR3
NUFIP1ENSG00000083635.7400.61340569.00240-0.506202.300901.42280HepG2MTPAP
NUFIP1ENSG00000083635.7368.87430494.72980-0.423502.169801.50500HepG2NSUN2
NUFIP1ENSG00000083635.7307.84290391.99820-0.348702.036901.50340HepG2PCBP1
NUFIP1ENSG00000083635.7611.20120498.751000.293201.855401.40950HepG2RBM22
NUFIP1ENSG00000083635.7302.21550392.05840-0.375501.927101.35570HepG2RBM25
NUFIP1ENSG00000083635.7349.94670443.90630-0.343101.958901.48630HepG2NELFE
NUFIP1ENSG00000083635.7296.92350218.378000.443202.008701.47700HepG2RPS19
NUFIP1ENSG00000083635.7301.81080415.28050-0.460403.113902.49140HepG2SF3B4
NUFIP1ENSG00000083635.7452.03470563.31870-0.317502.135501.67720HepG2SRFBP1
NUFIP1ENSG00000083635.7310.69780419.10650-0.431803.054402.32920HepG2SRSF7
NUFIP1ENSG00000083635.7224.69650352.64130-0.650205.271404.55260HepG2SRSF9
NUFIP1ENSG00000083635.7157.57980279.24210-0.825403.997603.20720HepG2SUPV3L1
NUFIP1ENSG00000083635.7281.97820543.78150-0.947409.296808.08220HepG2TARDBP
NUFIP1ENSG00000083635.7146.38740252.42020-0.786005.009804.37800HepG2TIAL1
NUFIP1ENSG00000083635.7314.85660408.63720-0.376102.446501.78280HepG2UPF1
NUFIP1ENSG00000083635.7521.05610394.522700.401202.966502.35000HepG2UTP3
NUFIP1ENSG00000083635.7253.41550347.50600-0.455502.903102.21810HepG2ZC3H8
NUFIP1ENSG00000083635.7350.87080219.739100.675004.108902.63380K562AARS
NUFIP1ENSG00000083635.7332.40660229.308800.535603.361002.74690K562AGGF1
NUFIP1ENSG00000083635.7353.45630238.606000.566803.411002.68380K562AKAP8L
NUFIP1ENSG00000083635.7392.47970574.84750-0.550602.346701.38370K562CNOT7
NUFIP1ENSG00000083635.7224.45340386.15390-0.782806.273905.09520K562CPSF6
NUFIP1ENSG00000083635.7899.07730584.795500.620409.037607.94310K562DDX47
NUFIP1ENSG00000083635.7337.22470256.758000.393202.176901.41070K562DKC1
NUFIP1ENSG00000083635.7127.20850196.14780-0.624702.967901.70670K562EIF2S1
NUFIP1ENSG00000083635.7266.67970389.67250-0.547202.587701.88770K562EIF2S2
NUFIP1ENSG00000083635.7347.94310153.911901.176606.577804.97170K562EIF3A
NUFIP1ENSG00000083635.7273.70310183.912900.573503.408502.53200K562EIF3G
NUFIP1ENSG00000083635.7331.10620479.63890-0.534703.628402.64650K562FIP1L1
NUFIP1ENSG00000083635.7265.41830392.90890-0.565903.304502.36550K562FMR1
NUFIP1ENSG00000083635.7369.46820194.008200.929208.956307.93980K562FXR1
NUFIP1ENSG00000083635.7256.26090179.955500.509901.911001.33560K562G3BP2
NUFIP1ENSG00000083635.7241.07420368.67940-0.612903.777902.85620K562GPKOW
NUFIP1ENSG00000083635.7164.42130240.61430-0.549301.943501.43210K562HNRNPC
NUFIP1ENSG00000083635.7398.91770528.50090-0.405802.626901.60080K562HNRNPL
NUFIP1ENSG00000083635.7490.78400650.31710-0.406102.660401.87940K562HSPD1
NUFIP1ENSG00000083635.7313.41000222.492900.494202.743201.90770K562MAGOH
NUFIP1ENSG00000083635.7351.31340198.833100.821104.521303.30560K562NAA15
NUFIP1ENSG00000083635.7389.39530544.45550-0.483603.266602.36180K562PPIG
NUFIP1ENSG00000083635.7351.23200194.452800.852905.719404.63950K562PRPF8
NUFIP1ENSG00000083635.7379.66810216.154000.812604.778303.92760K562PTBP1
NUFIP1ENSG00000083635.7882.52220630.147300.485803.978103.00420K562PUF60
NUFIP1ENSG00000083635.7425.68850236.632600.847006.465805.67610K562PUS1
NUFIP1ENSG00000083635.7350.39780230.562100.603704.073803.37140K562RBM15
NUFIP1ENSG00000083635.7321.37920198.098600.698003.651702.71010K562RPS19
NUFIP1ENSG00000083635.7298.76010405.61090-0.441102.933702.09650K562SF3A3
NUFIP1ENSG00000083635.7431.00550245.660300.810907.479306.11530K562SYNCRIP
NUFIP1ENSG00000083635.7279.62320435.92610-0.640605.135704.18820K562UPF1
NUFIP1ENSG00000083635.7488.03820387.850100.331402.241701.47280K562WDR43
NUFIP1ENSG00000083635.7323.81330511.28060-0.659002.068101.33340K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NUFIP1 is not available on ENCORE database.





1 RBPs can affect the splicing of NUFIP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENUFIP1ENSG00000083635.7chr13-455562064555628945554856455549554556315945563618-0.287000.000000.00002excludedK562AQR
SENUFIP1ENSG00000083635.7chr13-455335154553370945523856455239734553997845540071-0.224000.000000.00000excludedK562AQR
SENUFIP1ENSG00000083635.7chr13-455533244555340145539978455400714555402445554087-0.125000.000790.01001excludedK562AQR
A3SSNUFIP1ENSG00000083635.7chr13-4555332445553527455533244555340145554024455541760.069000.003430.02075longerK562AQR
A3SSNUFIP1ENSG00000083635.7chr13-4555402445554176455540244555408745554856455549980.051000.007380.04067longerK562AQR
A3SSNUFIP1ENSG00000083635.7chr13-4553997845540103455399784554007145553324455534730.246000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NUFIP1 is not avaliable on ENCORE database.