NEDD8-MDP1

General Information

Gene Name : NEDD8-MDP1
Gene ID : ENSG00000255526.6
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: NEDD8-MDP1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	NEDD8-MDP1	ENSG00000255526.6	1.23	0.18	0.70	ENCSR000AEF
HepG2	NEDD8-MDP1	ENSG00000255526.6	1.44	2.22	1.83	ENCSR985KAT
K562	NEDD8-MDP1	ENSG00000255526.6	0.00	0.25	0.12	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for NEDD8-MDP1 is not avaliable on ENCORE database.

Proteins bound to RNA

NEDD8-MDP1 RNA is bound by 29 proteins.

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eCLIP assay for NEDD8-MDP1 is not avaliable on ENCORE database.

29 proteins are bound to NEDD8-MDP1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr14	24686221	24686283	-	3'-UTR,intron-Distal,intron-Proximal	5.09032	400.00000	HepG2	LARP4
chr14	24686300	24686353	-	3'-UTR,CDS,intron-Distal,intron-Proximal	6.07781	59.55867	HepG2	LARP4
chr14	24686283	24686300	-	3'-UTR,intron-Distal,intron-Proximal	4.99983	55.86410	HepG2	LARP4
chr14	24686256	24686325	-	3'-UTR,intron-Distal,intron-Proximal	4.37438	51.70489	HepG2	DDX55
chr14	24686177	24686200	-	3'-UTR,intron-Distal,intron-Proximal	5.20366	43.07582	HepG2	LARP4
chr14	24686220	24686256	-	3'-UTR,intron-Distal,intron-Proximal	3.92832	38.04414	HepG2	DDX55
chr14	24686086	24686140	-	3'-UTR,intron-Distal,intron-Proximal	5.06395	33.61192	HepG2	LARP4
chr14	24687385	24687422	-	CDS,intron-Distal,intron-Proximal	4.08935	27.04926	HepG2	LARP4
chr14	24687326	24687422	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.27448	26.63658	HepG2	BCLAF1
chr14	24686150	24686177	-	3'-UTR,intron-Distal,intron-Proximal	4.61361	25.26190	HepG2	LARP4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 83 entries

eCLIP assay for NEDD8-MDP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for NEDD8-MDP1 is not available on ENCORE database.
15 RBPs can affect the levels of NEDD8-MDP1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for NEDD8-MDP1 is not available on ENCORE database.

15 RBPs can affect the gene expression of NEDD8-MDP1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
NEDD8-MDP1	ENSG00000255526.2	35.28270	118.83030	-1.75190	6.96350	4.14170	HepG2	RBM14
NEDD8-MDP1	ENSG00000255526.2	1.24690	23.51850	-4.23730	4.76970	4.01130	K562	RBM15
NEDD8-MDP1	ENSG00000255526.2	23.59160	0.87720	4.74910	5.27830	2.86040	K562	SLTM
NEDD8-MDP1	ENSG00000255526.2	31.20620	4.85990	2.68270	4.04550	2.70040	HepG2	FASTKD2
NEDD8-MDP1	ENSG00000255526.2	283.09270	126.42130	1.16290	3.13410	2.33840	HepG2	NSUN2
NEDD8-MDP1	ENSG00000255526.2	5.66400	25.82850	-2.18910	3.19670	2.30480	K562	KIF1C
NEDD8-MDP1	ENSG00000255526.2	1.05060	13.83540	-3.71900	2.70230	1.98790	HepG2	PABPC4
NEDD8-MDP1	ENSG00000255526.2	16.26330	0.77820	4.38520	3.72400	1.94910	K562	CEBPZ
NEDD8-MDP1	ENSG00000255526.2	10.26120	0.00000	99999.99990	2.74180	1.72810	K562	UCHL5
NEDD8-MDP1	ENSG00000255526.2	86.15460	25.25850	1.77010	2.26480	1.63790	HepG2	RPLP0
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 15 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for NEDD8-MDP1 is not available on ENCORE database.

9 RBPs can affect the splicing of NEDD8-MDP1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	NEDD8-MDP1	ENSG00000255526.2	chr14	-	24700857	24700943			24687589	24687637	24701455	24701542	0.06300	0.00000	0.00000	included	K562	HNRNPC
A3SS	NEDD8-MDP1	ENSG00000255526.2	chr14	-	24687589	24687734			24687589	24687637	24700857	24700943	0.37100	0.00000	0.00000	longer	K562	AQR
MXE	NEDD8-MDP1	ENSG00000255526.2	chr14	-	24684942	24685003	24686391	24686468	24684757	24684868	24687338	24687421	0.66000	0.00000	0.00001	1included	K562	AQR
MXE	NEDD8-MDP1	ENSG00000255526.2	chr14	-	24687264	24687449	24687589	24687637	24686391	24686429	24701455	24701542	-0.07300	0.00000	0.00000	2included	K562	AQR
MXE	NEDD8-MDP1	ENSG00000255526.2	chr14	-	24687264	24687421	24687589	24687637	24686391	24686429	24701455	24701542	-0.07600	0.00000	0.00000	2included	K562	AQR
MXE	NEDD8-MDP1	ENSG00000255526.2	chr14	-	24687264	24687421	24687589	24687637	24686391	24686429	24701455	24701542	-0.05100	0.00000	0.00000	2included	HepG2	SF3A3
MXE	NEDD8-MDP1	ENSG00000255526.2	chr14	-	24687338	24687421	24687589	24687637	24686391	24686429	24701455	24701542	-0.09700	0.00000	0.00001	2included	HepG2	SFPQ
MXE	NEDD8-MDP1	ENSG00000255526.2	chr14	-	24687338	24687421	24687589	24687637	24686391	24686429	24701455	24701542	-0.07700	0.00001	0.00018	2included	HepG2	U2AF2
MXE	NEDD8-MDP1	ENSG00000255526.2	chr14	-	24684942	24685003	24686391	24686429	24684757	24684868	24687338	24687421	-0.05200	0.00004	0.01069	2included	HepG2	SUGP2
MXE	NEDD8-MDP1	ENSG00000255526.2	chr14	-	24684942	24685003	24686391	24686429	24684757	24684868	24687338	24687421	0.06600	0.00009	0.00315	1included	K562	DROSHA

Showing 1 to 10 of 17 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

NEDD8-MDP1

General Information

Functions

Localization

Domains (AlphaFold: NEDD8-MDP1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for NEDD8-MDP1 is not avaliable on ENCORE database.

29 proteins are bound to NEDD8-MDP1 RNA:

eCLIP assay for NEDD8-MDP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for NEDD8-MDP1 is not available on ENCORE database.

15 RBPs can affect the gene expression of NEDD8-MDP1 :

The Knockdown/knockout RNA-Seq assay for NEDD8-MDP1 is not available on ENCORE database.

9 RBPs can affect the splicing of NEDD8-MDP1 :

The Knockdown/knockout RNA-Seq assay for NEDD8-MDP1 is not avaliable on ENCORE database.