NAF1

General Information

Gene Name : NAF1
Gene ID : ENSG00000145414.8
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: NAF1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	NAF1	ENSG00000145414.8	9.33	8.63	8.98	ENCSR000AEF
HepG2	NAF1	ENSG00000145414.8	6.00	10.44	8.22	ENCSR985KAT
K562	NAF1	ENSG00000145414.8	15.05	14.80	14.93	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for NAF1 is not avaliable on ENCORE database.

Proteins bound to RNA

NAF1 RNA is bound by 14 proteins.

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eCLIP assay for NAF1 is not avaliable on ENCORE database.

14 proteins are bound to NAF1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr4	164045269	164045288	-	intron-Distal	5.07477	16.36380	K562	XRCC6
chr4	164045288	164045317	-	intron-Distal	4.71132	16.07223	K562	XRCC6
chr4	164087898	164088037	-	5'-UTR,intron-Distal,intron-Proximal	4.94262	10.95413	K562	DDX3X
chr4	164054662	164054769	-	intron-Distal	4.45235	10.06297	K562	KHSRP
chr4	164061227	164061296	-	intron-Distal,intron-Proximal	3.93476	8.44734	K562	KHSRP
chr4	164047289	164047363	-	intron-Distal	4.79928	8.23960	K562	YBX3
chr4	164050353	164050407	-	CDS,intron-Distal	4.32189	7.70265	K562	RBM15
chr4	164061296	164061370	-	intron-Distal,intron-Proximal	3.45196	7.63715	K562	KHSRP
chr4	164051796	164051926	-	intron-Distal	4.00973	7.26586	K562	KHSRP
chr4	164038737	164038872	-	intron-Distal	5.26266	6.58769	K562	EIF4G2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 24 entries

eCLIP assay for NAF1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for NAF1 is not available on ENCORE database.
49 RBPs can affect the levels of NAF1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for NAF1 is not available on ENCORE database.

49 RBPs can affect the gene expression of NAF1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
NAF1	ENSG00000145414.4	120.24270	375.55080	-1.64310	15.65440	14.24880	HepG2	GPKOW
NAF1	ENSG00000145414.4	404.55990	805.70620	-0.99390	8.86060	7.43180	K562	GPKOW
NAF1	ENSG00000145414.4	499.26730	843.86110	-0.75720	8.74960	7.33870	K562	CPSF6
NAF1	ENSG00000145414.4	665.95410	378.18830	0.81620	8.55720	6.47120	K562	AARS
NAF1	ENSG00000145414.4	181.29790	358.39280	-0.98320	7.06250	6.11020	HepG2	HNRNPLL
NAF1	ENSG00000145414.4	354.43840	202.51480	0.80740	6.90960	6.03530	HepG2	UTP3
NAF1	ENSG00000145414.4	182.14440	359.20960	-0.97970	7.50600	5.75740	K562	UCHL5
NAF1	ENSG00000145414.4	242.36320	413.66060	-0.77130	6.00730	5.16120	K562	HNRNPC
NAF1	ENSG00000145414.4	104.47120	221.32730	-1.08310	5.97130	5.03510	HepG2	EIF4A3
NAF1	ENSG00000145414.4	95.36990	200.27060	-1.07030	5.42230	4.60970	HepG2	EIF2S1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 53 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for NAF1 is not available on ENCORE database.

9 RBPs can affect the splicing of NAF1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	NAF1	ENSG00000145414.4	chr4	-	164066933	164067016	164061374	164061535	164069492	164069706	-0.14300	0.00000	0.00003	excluded	K562	AQR
SE	NAF1	ENSG00000145414.4	chr4	-	164066933	164067016	164061374	164061535	164069492	164069586	-0.27800	0.00000	0.00000	excluded	K562	PUS1
A3SS	NAF1	ENSG00000145414.4	chr4	-	164061374	164061577	164061374	164061535	164066933	164067016	0.12200	0.00001	0.00014	longer	K562	AQR
SE	NAF1	ENSG00000145414.4	chr4	-	164066933	164067016	164061374	164061535	164069492	164069586	0.24900	0.00004	0.01741	included	K562	FXR2
SE	NAF1	ENSG00000145414.4	chr4	-	164066933	164067016	164061374	164061535	164069492	164069586	-0.15400	0.00016	0.00841	excluded	K562	UTP18
SE	NAF1	ENSG00000145414.4	chr4	-	164054305	164054408	164049820	164050500	164058350	164058402	-0.16900	0.00032	0.04994	excluded	K562	HNRNPM
SE	NAF1	ENSG00000145414.4	chr4	-	164079376	164079479	164078115	164078606	164085368	164085543	-0.53000	0.00043	0.00835	excluded	K562	PUS1
A3SS	NAF1	ENSG00000145414.4	chr4	-	164058350	164058508	164058350	164058402	164061374	164061617	0.06200	0.00076	0.00544	longer	K562	AQR
SE	NAF1	ENSG00000145414.4	chr4	-	164066933	164067016	164061374	164061535	164069492	164069586	-0.11700	0.00081	0.02315	excluded	K562	RBM15
SE	NAF1	ENSG00000145414.4	chr4	-	164066933	164067016	164061374	164061535	164069492	164069586	-0.09900	0.00092	0.05967	excluded	K562	HNRNPL

Showing 1 to 10 of 13 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

NAF1

General Information

Functions

Localization

Domains (AlphaFold: NAF1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for NAF1 is not avaliable on ENCORE database.

14 proteins are bound to NAF1 RNA:

eCLIP assay for NAF1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for NAF1 is not available on ENCORE database.

49 RBPs can affect the gene expression of NAF1 :

The Knockdown/knockout RNA-Seq assay for NAF1 is not available on ENCORE database.

9 RBPs can affect the splicing of NAF1 :

The Knockdown/knockout RNA-Seq assay for NAF1 is not avaliable on ENCORE database.